| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,855,234 | Δ1 bp | coding (356/1077 nt) | ydjL ← | zinc‑binding dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,855,231 | 0 | C | . | 90.0% | 31.0 / ‑1.3 | 10 | coding (359/1077 nt) | ydjL | zinc‑binding dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base . (5/4); total (5/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAACACCATCAGGGATTTCCCACAACGCATGACGATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCGCCCCAGGTATTATTATCCAGACCAAGGTTTACTTTTTCTGTACAACACAGAAAATCACCTTGTTCACAGGCCGGACAAACACCG > NZ_CP009273/1855145‑1855314 | cAACACCATCAGGGATTTCCCACAACGCATGACGATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCGccca < 2:177420/90‑2 (MQ=255) acacCATCAGGGATTTCCCACAACGCATGACGATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCGcccagg > 1:380629/1‑87 (MQ=255) cacCATCAGGGATTTCCCACAACGCATGACGATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCGcccaggt < 2:559111/90‑5 (MQ=255) tCCCACAACGCATGACGATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCG‑CCCAGGTATTATTATCCAGAc > 2:537327/1‑90 (MQ=255) cATGACGATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCG‑CCCAGGTATTATTATCCAGACCAAGGTTTAc > 1:185773/1‑90 (MQ=255) cATGACGATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCG‑CCCAGGTATTATTATCCAGACCAAGGTTTAc > 1:541612/1‑90 (MQ=255) aCGATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCG‑CCCAGGTATTATTATCCAGACCAAGGTTTACtttt < 2:185773/90‑1 (MQ=255) gATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCG‑CCCAGGTATTATTATCCAGACCAAGGTTTACTTTTTc < 1:231152/90‑1 (MQ=255) atatTTGGAAAAACCACCG‑CCCAGGTATTATTATCCAGACCAAGGTTTACTTTTTCTGTACAACACAGAAAATCACCTTGTTCACAGGcc > 1:311642/1‑90 (MQ=255) atatTTGGAAAAACCACCG‑CCCAGGTATTATTATCCAGACCAAGGTTTACTTTTTCTGTACAACACAGAAAATCACCTTGTTCACAGGcc < 2:237512/90‑1 (MQ=255) aaaaCCACCGCCCCAGGTATTATTATCCAGACCAAGGTTTACTTTTTCTGTACAACACAGAAAATCACCTTGTTCACAGGCCGGACAAac < 2:217544/90‑1 (MQ=255) aaaCCACCG‑CCCAGGTATTATTATCCAGACCAAGGTTTACTTTTTCTGTACAACACAGAAAATCACCTTGTTCACAGGCCGGACAAacac > 2:166297/1‑90 (MQ=255) accaccG‑CCCAGGTATTATTATCCAGACCAAGGTTTACTTTTTCTGTACAACACAGAAAATCACCTTGTTCACAGGCCGGACAAACACCg < 2:292793/90‑1 (MQ=255) | CAACACCATCAGGGATTTCCCACAACGCATGACGATGAATTTTGAGAATTTCACCAGGAACCAGACAATATTTGGAAAAACCACCGCCCCAGGTATTATTATCCAGACCAAGGTTTACTTTTTCTGTACAACACAGAAAATCACCTTGTTCACAGGCCGGACAAACACCG > NZ_CP009273/1855145‑1855314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |