| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,379,045 | 0 | T | G | 64.7% | 4.0 / 13.6 | 17 | G224G (GGT→GGG) | ycjX | YcjX family protein |
| Reads supporting (aligned to +/- strand): ref base T (3/3); new base G (11/0); total (14/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.94e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.63e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATTATCTCCACCACTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGTCCAAACTGGCGCAGGCCGATAAGCATACCAATGCC > NZ_CP009273/1378965‑1379132 | gATTATCTCCACCACTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCcgcg > 2:292393/1‑90 (MQ=255) accacTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAAttct > 2:357473/1‑90 (MQ=255) ccacTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGGGCCCGCGCTGCAAttttt > 2:354850/1‑90 (MQ=255) ccacTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGGGCCCCCGCCGCCAttctt > 1:451192/1‑90 (MQ=255) cTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGGGCCCGCGCTGCCATTCTTccc > 1:553969/1‑90 (MQ=255) gTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGt < 1:357473/90‑1 (MQ=255) gTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCGCGCTGGAATTCTTCCCgg > 2:52166/1‑89 (MQ=255) aaGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCCCGCTGCAATTCTTTCCGTGGc > 1:97107/1‑90 (MQ=255) gCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCCCCCGCGCTGCCATGTTTTCCGCTGCCGGa > 1:262904/1‑90 (MQ=255) cAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCGCGCTGCCATTCTTCCCCTGGCCgggt > 1:69472/1‑88 (MQ=255) tGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGTCGCCCGCGCTGGAATTCTTCCCCTGGCCGGGAGTCGATa > 2:360219/1‑90 (MQ=255) aGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCCCGCCGCAATTTTTCCCCTGGCCGGGTGGTGGTACCTGGGGGGAgg > 1:427703/1‑89 (MQ=255) gCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCCCGCTGCAATTCTTCCCCTTGCCGGGCGTCGATACCTCGGGCGAGTc > 2:486896/1‑90 (MQ=255) gTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGTCCAAACTGGCGCAg < 2:451192/90‑1 (MQ=255) tGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGTCCAAACTGGCGCAGGCCg < 2:206824/90‑1 (MQ=255) cAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGGCCAAACTGGCGCAGGCCGATAAGCATACCAATg > 1:240447/1‑90 (MQ=255) ggTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGTCCAAACTGGCGCAGGCCGATAAGCATACAAATGcc > 2:113747/1‑90 (MQ=255) | GATTATCTCCACCACTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGTCCAAACTGGCGCAGGCCGATAAGCATACCAATGCC > NZ_CP009273/1378965‑1379132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |