| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,331,202 | 0 | A | C | 54.5% | 7.3 / 11.0 | 11 | G566G (GGT→GGG) | gyrA | DNA topoisomerase (ATP‑hydrolyzing) subunit A |
| Reads supporting (aligned to +/- strand): ref base A (4/1); new base C (0/6); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAGTGTTCGCCACCAGCAGTCGGTCGATAAAGTCTTCTTCTTTAATACGTGCGGCAGATTTACCTTT‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACAT > NZ_CP009273/2331141‑2331287 | gAGTGTTCGCCACCAGCAGTCGGTCGATAAAGTCTTCTTCTTTAATACGTGCGGCAGATTTACCTTT‑CCCGCCACGACGCTGCGCTTCGt > 1:87640/1‑90 (MQ=255)gAGTGTTCGCCACCAGCAGTCGGTCGATAAAGTCTTCTTCTTTAATACGTGCGGCAGATTTACCTTT‑CCCGCCACGACGCTGCGCTTCGt > 2:368241/1‑90 (MQ=255) ccccaGCAGTGGGTCGAAAAAGTCTTCTTTTTTAATCCGTGCGGCAGTTTTCCCTTT‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAg < 2:87284/88‑1 (MQ=255) ccccaGCAGTCGGTCAAAAAAGTCTTCTTTTTTAATACGTGCGGAATATTTCCCTTT‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAg < 2:474015/88‑1 (MQ=255) ggtcaATAAAGTCTTTTTTTTTAATACGGGGGGAAGTTTTCCCTTT‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACt < 1:241597/90‑1 (MQ=255) gtcgATAAAGTTTTCTTTTTTAATGCGTGCGGCAGTTTTCCCTTC‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACtt < 1:379526/90‑1 (MQ=255) ttAATACGTGCGGCAGATTTACCTTT‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTgagag > 1:146924/1‑90 (MQ=255) tGCGGCAGATTTACCTTT‑CGCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCAc > 1:556153/1‑90 (MQ=255) gaaGATTTCCCTTT‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGAcc < 2:1724/88‑1 (MQ=255) taTTTCCCTTC‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACcaca < 1:368241/89‑1 (MQ=255) gATTTACCTTT‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACcaca < 2:146924/90‑1 (MQ=255) ttttCCTTTCCCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACAt < 1:316464/90‑1 (MQ=255) | GAGTGTTCGCCACCAGCAGTCGGTCGATAAAGTCTTCTTCTTTAATACGTGCGGCAGATTTACCTTT‑CCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACAT > NZ_CP009273/2331141‑2331287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |