| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,806,452 | 0 | T | C | 58.8% | 5.2 / 13.2 | 17 | L121P (CTC→CCC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| Reads supporting (aligned to +/- strand): ref base T (3/4); new base C (0/10); total (3/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.15e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.50e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCTTCCCGTGGTTTGCTCATCTG > NZ_CP009273/3806363‑3806536 | ggCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCt > 2:192224/1‑90 (MQ=255) gATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCAt > 1:372638/1‑90 (MQ=255) ccGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACca < 2:558541/90‑1 (MQ=255) ccGTGTTGCTCCCGGAATGGCGAATGCCCTGCTATCGACGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACca < 2:302465/90‑1 (MQ=255) gtgtTGCGGCGGGAAGGGCGAATGCCCTGGTATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACcagc < 1:192224/90‑1 (MQ=255) cGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCg > 1:425498/1‑90 (MQ=255) agggCGAATGCCCTGGTATCGACGATTTGTCTGCTTACACCCGCCCCTTTAGCCGTCCCCCCCGCCATGAACCAGCAGATGTACCGTGcc < 2:425498/88‑1 (MQ=255) gAATGCCCTGGTACCGACGATTTGTCGGGCTACCCCTGCCCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGc < 2:357876/90‑1 (MQ=255) gccTGGTATCGCAGATTTGTTTGCCTACCCCTGGGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc < 2:561060/89‑1 (MQ=255) cccTGGTATCGCCGATTTGTCTGGCTACCCCTGCCCCTGTACCCGTCCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc < 2:488840/89‑1 (MQ=255) cccTGGTACCGAGGTTTTGCCTGGCTACCCCTGCGCCGGTGCCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc < 1:260925/89‑1 (MQ=255) gTATCGCCGTTTTGTCTGGCTCCCCCGGCGCCTGTACCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:469964/90‑1 (MQ=255) gTATCGACGTTTTGTCTGGCTCCCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 2:531140/90‑1 (MQ=255) gTATCGACGTTTTGTCTGCCTCCCCCTGCCCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 2:497945/90‑1 (MQ=255) gcgcCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAc > 2:27570/1‑56 (MQ=255) gcgcCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAc < 1:27570/56‑1 (MQ=255) tacccGTCCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCTTCCCGTGGTTTGCTCa < 2:78965/87‑1 (MQ=255) cttGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCTTCCCGTGGTTTGCTCATCTg < 2:478473/88‑1 (MQ=255) | GGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCTTCCCGTGGTTTGCTCATCTG > NZ_CP009273/3806363‑3806536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |