| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,812,807 | (C)7→8 | intergenic (‑50/+55) | celF ← / ← chbR | 6‑phospho‑beta‑glucosidase/transcriptional regulator ChbR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,812,800 | 1 | . | C | 94.1% | 49.4 / ‑2.4 | 17 | intergenic (‑43/+62) | celF/chbR | 6‑phospho‑beta‑glucosidase/transcriptional regulator ChbR |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (9/7); total (10/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.79e-01 | |||||||||||
TCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGT > NZ_CP009273/1812718‑1812879 | tCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑ccccc‑cc > 2:238190/1‑90 (MQ=255)tCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑ccccc‑cc > 2:151141/1‑90 (MQ=255) gacgacTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATcc > 1:414931/1‑90 (MQ=255) cgacTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAg > 1:207289/1‑90 (MQ=255) cTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCa < 2:389683/76‑1 (MQ=255) cTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCa > 1:389683/1‑76 (MQ=255) tAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAAt < 1:151141/90‑1 (MQ=255) tctcCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCa < 2:207289/90‑1 (MQ=255) ctcCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAg < 1:134715/90‑1 (MQ=255) ctcCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAg < 1:124679/90‑1 (MQ=255) tCAGTACAGAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATaa < 2:116774/90‑1 (MQ=255) gAATACTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTAc > 1:76789/1‑90 (MQ=255) cTGATATCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGAtt > 1:496802/1‑90 (MQ=255) atCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGtat < 2:232511/70‑1 (MQ=255) atCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGtat > 1:232511/1‑70 (MQ=255) atCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAAtt > 2:116639/1‑90 (MQ=255) atCTGGCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAAtt > 2:117301/1‑90 (MQ=255) cTGGCATATCTG‑CCCCCTCCGGACATAAATAATCAAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCa > 1:463365/1‑90 (MQ=255) ggCATATCTGCCCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGt > 2:107621/1‑90 (MQ=255) | TCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCC‑CCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGT > NZ_CP009273/1812718‑1812879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |