| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 75 (1.710) | 31/168 | 0.2 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/360191‑360104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < NZ_CP009273/360286‑360200 ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAA > 1:213414/1‑90 AAACCCGCGGGGAGCGGTTTTGAACGTTGCGAAGCAACGGCCG‑GGGGGGG‑GGGGGGCAGG‑CCGCCCGCCATAAACTGCCAGGAATTAATT < 2:213414/90‑1 AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTC > 1:787904/1‑90 AATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGG‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTC > 1:343325/1‑90 GCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCtgtc > 2:596497/1‑86 GCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAG > 2:1048433/1‑90 GGAGGGGTTTTGAACGTTGCGAAACAGCGGCCG‑GGAGGGG‑GGGGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCAT < 2:146121/90‑1 GAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATC > 2:1095807/1‑90 GAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATC > 2:308297/1‑90 GAACGTTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACG > 1:984967/1‑90 TTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGG > 2:751945/1‑90 TTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGG > 1:478282/1‑90 TTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGG > 2:154604/1‑90 TTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGG > 2:704667/1‑90 TTGCGAAGCAACGGCCC‑GGAGGGG‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTACTTCCCCAGGCATCAAATAAAAGGAAAGG > 1:237358/1‑90 caAAGCACCGGCCG‑GGGGGGG‑GGGGGGCAGG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTC < 2:276743/88‑1 aAAGCAGCGCCCG‑GGGGGGG‑GGGGGGGAGG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCA < 2:382604/89‑1 AAGCAACGGCCCGGGGGGGG‑GGGGGGCGGC‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCA < 2:949729/90‑1 agCGGCCG‑GGGGGGT‑GGGGGCAAGC‑TCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGA < 1:736776/88‑1 cCGGCCG‑GGGGGGG‑GGCGGGCGGG‑CCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA < 2:164989/89‑1 ACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA > 1:608702/1‑90 ACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA > 1:921484/1‑90 ACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA > 2:1249291/1‑90 ACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA > 1:123918/1‑90 ACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA > 1:507200/1‑90 ACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAAGTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA > 1:649783/1‑90 ccggCC‑GGCGGGTGGGCGCGCAGC‑CCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA < 1:696865/86‑1 CGGCCC‑GGGGGGG‑GGGGGGGAGGCCCCCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA < 1:290476/90‑1 GGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAG > 1:647876/1‑90 GT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTT > 1:1036123/1‑90 GT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTT > 1:953225/1‑90 GT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTT > 1:75289/1‑90 GT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTAAGTCGAAAGACTGGGCCTT > 2:649912/1‑90 T‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT > 1:364377/1‑90 T‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT > 2:890432/1‑90 T‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT > 2:918067/1‑90 GCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCGTCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTAGCTTT > 1:781104/1‑90 GCAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACCAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTT > 1:797567/1‑90 CAGG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTA > 1:561888/1‑90 GG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATC > 1:983935/1‑90 GG‑ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATC > 1:945458/1‑90 ccCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:461846/88‑1 GCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTT > 1:128205/1‑90 CATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAA < 1:100447/39‑1 CATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAA > 2:100447/1‑39 TAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCG < 2:1045079/90‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG < 2:580427/90‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG < 2:755449/90‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG < 1:431937/90‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG < 2:540040/90‑1 ACTGCCAGGAATTAATGCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTG < 1:40968/90‑1 GCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC < 1:626567/90‑1 GCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 2:404183/1‑90 GCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 2:412224/1‑90 GCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 2:523827/1‑90 GCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 2:997481/1‑90 GCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAC > 2:815554/1‑90 CCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACG > 2:998027/1‑90 CCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCA < 1:838019/43‑1 CCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCA > 2:838019/1‑43 CAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 1:412224/90‑1 CAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:983935/90‑1 CAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:945458/90‑1 CAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 1:363463/90‑1 CAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC < 2:921484/90‑1 GGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC < 1:795251/90‑1 GGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC < 1:998027/90‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 1:572236/90‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 1:784800/90‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 1:1249291/90‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 2:561888/90‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 1:975578/90‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 2:722185/90‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 1:410098/90‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < 2:608702/90‑1 ACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCC‑GGAGGGT‑GGCGGGCAGG‑ACGCCCGCCATAAACTGCCAGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/360191‑360104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC < NZ_CP009273/360286‑360200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |