| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,023,591 | 0 | T | G | 60.0% | 5.3 / 14.8 | 20 | V191G (GTG→GGG) | yedA | drug/metabolite exporter YedA |
| Reads supporting (aligned to +/- strand): ref base T (4/4); new base G (12/0); total (16/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.44e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.35e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCTCCCTTCCCTTTCAGGCTTCCTTGCGGTCGGCTATCTGGCGC > NZ_CP009273/2023518‑2023677 | gTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGGGGGGTTGGGATGGTGGGGGGGGGGGGGGGGGTAAAGATCgcggcg > 2:749767/1‑90 (MQ=255) cgcgCATTACCTTACCTGTAGGGATGATGGCGGGGGGGGTTTGGATGCTGGGGGCAGGGGGGGGGGTAATGATTGCGGCGGTGGtttggg > 2:144656/1‑86 (MQ=255) cgcgCATTACCTTACCTGTAGGGATGATGGCGGGGGGGGTTTAGATGGTGGGGGGCGGGGGGGGGGTAATGATTGCGGCGGTGGtttggg > 2:164766/1‑86 (MQ=255) ttacctGTAGGGATGATGGCGGGGGCGATTGAGATGCTGGCGGCAGGCGTGGGGTTAATGATCGCGGCGGTGGTTGCGGGGGGAAAACTg > 1:824615/1‑90 (MQ=255) tacctGTAGGGATGATGGCGGGTGCGATTGAGGTGCTGGCGGCAGGGGGGGGGTTTATGATCGCGGCGGTGGTTGGGGGGGGAAAAATGa > 1:1100281/1‑90 (MQ=255) tacctGTAGGGATGATGGCGGGGGCGATTGAGATGCTGGCGGCAGGCGGGGGGTTAATGATCGCGTCGGTGATTGCGGGGGAAAAACTGa > 1:24080/1‑90 (MQ=255) tAGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGGGTTAATGATCGCGTCGATGATTGCGGGGGAAAAAATGACGgcgc > 2:625475/1‑90 (MQ=255) tAGGGATGATGGCGGGGGCGATTGAGATGCTGGCGGCAGGCGTGGGGTTAATGATCGCGTCGATGATTGCGGGGGAAAAAATGACGgcgc > 1:417629/1‑90 (MQ=255) ggATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCtcc < 1:1223505/90‑1 (MQ=255) ggATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCtcc < 1:807124/90‑1 (MQ=255) gatgatGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCGATGATTGCGGGGGAAAAACTGACGGCGCtccc > 2:749484/1‑90 (MQ=255) atgatgGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCtccct < 2:620931/90‑1 (MQ=255) atgatgGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGGGTTAATGATCGCGTCGATGATTGCGGGGGAAAAACTGACGGCGCtccct > 2:951212/1‑90 (MQ=255) tgatgGCGGGGGCGATTGAGATGCTGGCGGCAGGCGTGGGGTTAATGATCGCGGCGATGATTGCGGGGGGAAAACTGACGGCGCtccctt > 1:856641/1‑90 (MQ=255) tgatgGCGGGGGCGATTGAGATGCTGGCGGCAGGCGGGGGGTTAATGATCGCGGCGATGATTGCGGGGGAAAAAATGACGGCGCtccctt > 1:156366/1‑90 (MQ=255) gatgGCGGGTGCGATTGAGATGGTGGCGGCAGGCGGGGTGTTAATGATCGCGTCGATGATTGCGGGGGAAAAAATGACGGCGCtcccttc > 1:485283/1‑90 (MQ=255) gggTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCTCCCTTCCCTTTc > 2:321153/1‑90 (MQ=255) gggTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCGATGATTGCGGGGGAAAAACTGACGGGGCTCCCTTCCCTTTc > 2:538240/1‑90 (MQ=255) gTGCGATTGAGATGCTGGCGGCAGGCGGGGGGGTAATGATCGCGTCGATGATTGCGGGGGAAAAACTGACGGCGCTCCCTTCCCTTTCAg > 1:474244/1‑90 (MQ=255) aGGCGTGGTGTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCTCCCTTCCCTTTCAGGCTTCCTTGCGGTCGGCTATCt < 1:732319/90‑1 (MQ=255) tggtgTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCTCCCTTCCCTTTCAGGCTTCCTTGCGGTCGGCTATCTGgcgc < 2:226950/90‑1 (MQ=255) ggtgTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCTCCCTTCCCTTTCAGGCTTCCTTGCGGTc > 2:259030/1‑76 (MQ=255) ggtgTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCTCCCTTCCCTTTCAGGCTTCCTTGCGGTc < 1:259030/76‑1 (MQ=255) | GTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCGATGATTGCGGGTGAAAAACTGACGGCGCTCCCTTCCCTTTCAGGCTTCCTTGCGGTCGGCTATCTGGCGC > NZ_CP009273/2023518‑2023677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |