| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 427,415 | Δ2 bp | coding (54‑55/885 nt) | tsx ← | nucleoside‑specific channel‑forming protein Tsx |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 427,415 | 0 | T | . | 100.0% | 50.2 / NA | 12 | coding (55/885 nt) | tsx | nucleoside‑specific channel‑forming protein Tsx |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (5/7); total (5/7) | |||||||||||
| * | NZ_CP009273 | 427,416 | 0 | A | . | 100.0% | 50.2 / NA | 12 | coding (54/885 nt) | tsx | nucleoside‑specific channel‑forming protein Tsx |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (5/7); total (5/7) | |||||||||||
CCGACAACGTTAACGCTCTGGTGCCACCAGTCGGAAAGATACTGCGGTTTGTCGTTTTCAGCTGCGTTGACAGTAAAAGACGAAGAGAGCGCCAGTACCGCACCGGCTGCCAGTAATGTTTTTTTCATATGTATGCCACTGTTTGAAAATCC > NZ_CP009273/427342‑427493 || ccGACAACGTTAACGCTCTGGTGCCACCAGTCGGAAAGATACTGCGGTTTGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAgcgc > 2:130620/1‑90 (MQ=255) cGACAACGTTAACGCTCTGGTGCCACCAGTCGGAAAGATACTGCGGTTTGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGcc < 1:139501/90‑1 (MQ=255) cGACAACGTTAACGCTCTGGTGCCACCAGTCGGAAAGATACTGCGGTTTGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGcc < 2:343356/90‑1 (MQ=255) aCGTTAACGCTCTGGTGCCACCAGTCGGAAAGATACTGCGGTTTGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGCCAGTAc > 1:226434/1‑90 (MQ=255) gTTAACGCTCTGGTGCCACCAGTCGGAAAGATACTGCGGTTTGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGCCAGTACCg > 2:414580/1‑90 (MQ=255) gATACTGCGGTTTGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGCCAGTACCGCACCGGCTGCCAGTAATGTTTTTTTCata < 1:10658/90‑1 (MQ=255) cTGCGGTTTGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGCCAGTACCGCACCGGCTGCCAGTAATGTTTTTTTCAtatgta > 1:144511/1‑90 (MQ=255) tttGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGCCAGTACCGCACCGGCTGCCAGTAATGTTTTTTTCATATGTATGCCAc < 1:130620/90‑1 (MQ=255) tttGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGCCAGTACCGCACCGGCTGCCAGTAATGTTTTTTTCATATGTATGCCAc < 1:206715/90‑1 (MQ=255) tttGTCGTTTTCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGCCAGTACCGCACCGGCTGCCAGTAATGTTTTTTTCATATGTATGCCAc < 1:51244/90‑1 (MQ=255) ttCAGCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGCCAGTACCGCACCGGCTGCCAGTAATGTTTTTTTCATATGTATGCCACTGTTTGaaa < 2:213296/90‑1 (MQ=255) gCTGCGTTGACAG‑‑AAAGACGAAGAGAGCGCCAGTACCGCACCGGCTGCCAGTAATGTTTTTTTCATATGTATGCCACTGTTTGAAAATcc > 1:221420/1‑90 (MQ=255) || CCGACAACGTTAACGCTCTGGTGCCACCAGTCGGAAAGATACTGCGGTTTGTCGTTTTCAGCTGCGTTGACAGTAAAAGACGAAGAGAGCGCCAGTACCGCACCGGCTGCCAGTAATGTTTTTTTCATATGTATGCCACTGTTTGAAAATCC > NZ_CP009273/427342‑427493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |