New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1391494	NA (NA)	7 (0.440)	6/166	0.8	100%	intergenic (+145/‑128)	BW25113_RS06980/ynaJ	IS5‑like element IS5 family transposase/DUF2534 family protein
	?	NZ_CP009273	1972747 =	0 (0.000)					intergenic (‑293/‑487)	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC

AACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATG  >  NZ_CP009273/1972658‑1972833                                                                                          |                                                                                       gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                                        <  1:327753‑M2/1‑1 (MQ=255)   atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcctt                                                                                      <  1:152137‑M2/3‑1 (MQ=255)          cGTTACTACACGCACATACAACGGAGGGGGGCTGTGATTTTCAATAATGTGTGATGCAGATCACACAAAACACTCACTTACTTAAggaag                                                                               >  1:60074‑M1/1‑85 (MQ=255)          cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                               >  2:113978‑M1/1‑85 (MQ=255)           gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaagg                                                                              <  1:284245‑M1/90‑7 (MQ=255)            agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAAt                                                                             >  1:68087‑M2/79‑90 (MQ=255)             cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtg                                                                            <  2:275307‑M1/90‑9 (MQ=255)               cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcg                                                                          >  2:210706‑M1/1‑80 (MQ=255)                   acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaaca                                                                      <  1:264844‑M1/90‑15 (MQ=255)                    cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaa                                                                     >  2:121685‑M1/1‑75 (MQ=255)                      cacaTACAACGGCGGGGGGCTGCGATTTTCAATAATCCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                   >  2:388093‑M1/1‑73 (MQ=255)                      cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                   <  2:133620‑M1/90‑18 (MQ=255)                       gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCAt                                                                  <  1:193089‑M2/23‑1 (MQ=255)                             acatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACtttt                                                            <  2:175065‑M2/29‑1 (MQ=255)                                   ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgaga                                                      >  2:192015‑M1/1‑60 (MQ=255)                                        tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGgtgt                                                 >  2:309736‑M2/51‑90 (MQ=255)                                              gactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                           >  1:200469‑M2/45‑90 (MQ=255)                                                     ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAgtaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                    <  2:298233‑M1/90‑49 (MQ=255)                                                        atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                 >  1:16891‑M1/1‑39 (MQ=255)                                                                         cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                >  2:134528‑M1/1‑22 (MQ=255)                                                                         cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtcccggatatgagatcatgtttgtcatctggagccatagaacagggttcatc                >  1:61371‑M1/1‑22 (MQ=255)                                                                                 acTCAATTACTTAAggaaggtgcgaacaaatccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca        <  2:433985‑M1/90‑77 (MQ=255)                                                                                       ttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg  >  2:118122‑M2/4‑90 (MQ=255)                                                                                          |                                                                                       AACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATG  >  NZ_CP009273/1972658‑1972833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.