Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	579573	579588	16	4 [1]	[1] 2	appY	DNA‑binding transcriptional activator AppY

TACTTGCCATGTTCAAAAAACGCGAAAGTGTAAATTCATTTATACTAACAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCAGTTTTAATA  >  NZ_CP009273/579483‑579581                                                                                          |          tACTTGCCATGTTCAAAAAACGCGAAAGTGTAAATTCATTTATACTAACAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCa           <  1:278068/90‑1 (MQ=255)          tGTTCAAAAAACGCGAAAGTGTAAATTCATTTATACTAACAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCAGTTTTAata  >  1:355551/1‑90 (MQ=255)                                               aaCAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCa           <  1:161118/44‑1 (MQ=255)                                               aaCAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCa           >  2:161118/1‑44 (MQ=255)                                                                                          |          TACTTGCCATGTTCAAAAAACGCGAAAGTGTAAATTCATTTATACTAACAAATATAAATACATTTACCTGTAAAATTACTGGAATAATCAGTTTTAATA  >  NZ_CP009273/579483‑579581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑