| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 382,920 | 0 | T | G | 54.5% | 4.1 / 10.0 | 11 | V165G (GTG→GGG) | tauC | taurine ABC transporter permease TauC |
| Reads supporting (aligned to +/- strand): ref base T (1/4); new base G (6/0); total (7/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGGTTTGGTATTGGTGAAACCTCGAAGATCTTACTGATCTATTTAGCGATTTTTGCACCGGTGGCGATGTCGGCGCTGGCGGGGGTGAAAAGCGTGCAGCAGGTTCGCATTCGTGCCGCCCAGTCGCTGGGTGCCAGCCGTGCGCAGGTGCTGTGGTTTGTCATTT > NZ_CP009273/382835‑383000 | tGGTTTGGTATTGGTGAAACCTCGAAGATCTTACTGATCTATTTAGCGATTTTTGCACCGGTGGCGATGTCGGCGCTGGCGGGGGGGaaa > 2:249229/1‑90 (MQ=255) tGGTGAAACCTCGAAGATCTTACTGATCTATTTAGCGATTTTTGCACCGGTGGCGATGTCGGCGCTGGCGGGGGTGAAAAGCGTgcagca > 2:286903/1‑90 (MQ=255) tGGTGAAACCTCGAAGATCTTACTGATCTATTTAGCGATTTTTGCACCGGTGGCGATGTCGGCGCTGGCGGGGGGGAAAAGCGTgcagca > 1:229857/1‑90 (MQ=255) tACTGATCTATTTAGCGATTTTTGCACCGGTGGCGATGTCGGCGCTGGCGGGGGTGAAAAGCGTGCAGCAGGTTCGCATTCGTGCCGccc < 2:98791/90‑1 (MQ=255) tCTATTTAGCGATTTTTGCACCGGCGGCGATGTCGGCGCTGGCGGGGGGGAAAAGCGTGCAGCAGGTTCGCATTCGGGCCGCCCAGTCGc > 2:98753/1‑90 (MQ=255) gCGATTTTTGCACCGGTGGCGATGTCGGCGCTGGCGGGGGTGAAAAGCGTGCAGCAGGTTCGCATTCGTGCCGCCCAGTCGCTGGGTGcc < 1:249229/90‑1 (MQ=255) aTTTTTGCACCGGTGGCGATGTCGGCGCTGGCGGGGGTGAAAAGCGTGCAGCAGGTTCGCATTCGTGCCGCCCAGTCGCTGGGTGCCAGc < 1:209487/90‑1 (MQ=255) ttttGCACCGGTGGCGATGTCGGCGCTGGCGGGGGGGAAAAGCGTGCAGCAGGTTCGCATTCGTGCCGCCCAGTCGCTGGGTGCCAGCCg > 2:302859/1‑90 (MQ=255) cGGTGGCGATGTCGGCGCTGGCGGGGGGGAAAAGCGTGCAGCAGGTTCGCATTCGGGCCGCCCAGTCGGTGGGTGCCCGCCGTGCGCAgg > 2:209487/1‑90 (MQ=255) gATGTCGGCGCTGGCGGGGGGGAAAAGCGTGCAGCAGGTTCGCATTCGTGCCGCCCAGTCGCTGGGTGCCAGCCGTGCGCAGGTGCtgtg > 2:429871/1‑90 (MQ=255) tGGCGGGGGTGAAAAGCGTGCAGCAGGTTCGCATTCGTGCCGCCCAGTCGCTGGGTGCCAGCCGTGCGCAGGTGCTGTGGTTTGTCAttt < 2:58010/90‑1 (MQ=255) | TGGTTTGGTATTGGTGAAACCTCGAAGATCTTACTGATCTATTTAGCGATTTTTGCACCGGTGGCGATGTCGGCGCTGGCGGGGGTGAAAAGCGTGCAGCAGGTTCGCATTCGTGCCGCCCAGTCGCTGGGTGCCAGCCGTGCGCAGGTGCTGTGGTTTGTCATTT > NZ_CP009273/382835‑383000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |