Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP009273762,1370CG54.5% 8.9 / 14.8 11A213G (GCG→GGG) mngAPTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC
Reads supporting (aligned to +/- strand):  ref base C (2/3);  new base G (0/6);  total (2/9)
Fisher's exact test for biased strand distribution p-value = 1.82e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

ATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGC  >  NZ_CP009273/762051‑762202
                                                                                      |                                                                 
atatCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGa                                                                <  2:135443/90‑1 (MQ=255)
  atCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATc                                                              <  1:191047/90‑1 (MQ=255)
  atCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATc                                                              <  2:429483/90‑1 (MQ=255)
                  aCGAAAACGCGGCGAAAATTTTTACGTAAAAAAACAAGGCGCTACCGGCTTTGAGGGGCTTTAAACGGGGGATAAACTAAATAGGGCAAc                                              <  2:231688/90‑1 (MQ=255)
                                            ttGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGGTCAAATCAATAATGGAACCGCCTGTATTTTTTCGGCTGGAgggg                    >  2:220657/1‑87 (MQ=255)
                                             taaaaaaCAGGGCGCTACCGGCATGGAGGGGGTTTTAAGGGGGGACAACCTAAATAGTGAAACCGCCTGTATTTTTGCGGCTGAAGTCGc                   <  2:285474/88‑1 (MQ=255)
                                             aaaaaaaCAGGGGGCTACCGGCTTTGAGGGGCTTTTAGGGGGGGAAAACCAAAATAGGGCAACCGCCTGTATTTTTGCGGCTGAAGTCGc                   <  2:347844/88‑1 (MQ=255)
                                             aaaaaaaCAGGGCGCAAACGGCTTTGAGGGGTTTTAAACGGGGAACCACCAAAATAGGGCAACCGCCTGTATTTTTGCGGCTGAAGTCGc                   <  2:442037/88‑1 (MQ=255)
                                               aaaaaCAAGGCGCAAAGGGTTTTGAGGGGTTTTAAAGGGGGGACCACCTAAATAGCCAAACCGCCTGTATTTTTGCGGCTGAAGTCGCCa                 <  1:394227/90‑1 (MQ=255)
                                                   aCAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTTCGGCTGAAGTCGCCCTCaa             >  1:442037/1‑90 (MQ=255)
                                                              aCGGCATTGAGGGGCGTTTAACGGGGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGc  <  1:220657/90‑1 (MQ=255)
                                                                                      |                                                                 
ATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAACAAGGCGCTAACGGCATTGAAGGGCGTTTAACGGCGGATCAACTCAATAGTGCAACCGCCTGTATTTTTGCGGCTGAAGTCGCCATCAAGGAGAGTGAGC  >  NZ_CP009273/762051‑762202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑