| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,334,224 | 0 | T | A | 52.9% | 1.9 / 19.2 | 17 | D1142V (GAT→GTT) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| Reads supporting (aligned to +/- strand): ref base T (1/7); new base A (9/0); total (10/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.11e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.53e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCGCCTGCGGTTCAATCACCACACCACGCCCCGGTAACC > NZ_CP009273/2334136‑2334293 | ggTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAatc > 1:181850/1‑90 (MQ=255) aCGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAgtcatc > 1:487389/1‑90 (MQ=255) aCGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAaacatc > 1:3053/1‑90 (MQ=255) ccATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCctg < 2:181850/90‑1 (MQ=255) ccATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGGAAAAACATcccc > 1:515189/1‑88 (MQ=255) aTTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGGAAAAACATccctct > 2:99906/1‑86 (MQ=255) tgtAAACTCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGGAAAAACATCCTGCTGCACcccc > 2:643617/1‑90 (MQ=255) aaCCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGAt < 1:710137/90‑1 (MQ=255) aGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAAAATCCTGCTGCCCCCCCCGATaaaac > 2:492347/1‑88 (MQ=255) tcatcaCCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAACATCCCGCTGCACCCCCCGATAAAACACCCGCGCCTGCggg > 2:113399/1‑89 (MQ=255) aCCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAAACATCCCTCTGCACCCCCTGGTAAAACACCTGCGCCTGCGGGTGAAt > 1:343992/1‑90 (MQ=255) aTTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCGCCTGCGGTTCAATcaccacac < 2:343992/90‑1 (MQ=255) gtgACACGCGCGCACGGTTAGCGGCGGTAAAAACATCCTGCTGCACGCCCCGATAAAACACCCGCGCCCGCGGGTCAATCaccacaccac > 2:83950/1‑90 (MQ=255) cacGCGCGCACGGTTAGCGACGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCGCCTGCGGTTCAATCACCACACCACGccc < 2:142563/90‑1 (MQ=255) gcgcgcACGGTTAGCGGCGGTAAAAACATCCTTCTGCACGCCCCGATAAAACACCCCCGCCGGCGGGTCAATCACCCCACcccccccccg > 2:487714/1‑88 (MQ=255) gcgcgcACGGTTAGCGGCGGTAAAAACATCCTGCTGCACCCCCCCATAAAACACCTGCGCCCGCGGGTCAATCACCACACCAcccccccg > 2:489975/1‑88 (MQ=255) cACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCGCCTGCGGTTCAATCACCACACCACGCCCCGGTAAcc < 1:83950/90‑1 (MQ=255) cACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCGCCTGCGGTTCAATCACCACACCACGCCCCGGTAAcc < 2:56777/90‑1 (MQ=255) cggTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCGCCTGCGGtt > 1:603272/1‑51 (MQ=255) cggTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCGCCTGCGGtt < 2:603272/51‑1 (MQ=255) | GGTACGCCATTCGCTGTGTAAACCCAGCCGCGTCTGAATATCATCACCCTGCGATTGTGACACGCGCGCACGGTTAGCGGCGGTAAAATCATCCTGCTGCACGCCCTGATAAATCACCTGCGCCTGCGGTTCAATCACCACACCACGCCCCGGTAACC > NZ_CP009273/2334136‑2334293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |