| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,695,560 | 0 | T | C | 55.0% | 20.4 / 27.3 | 20 | I116T (ATC→ACC) | malY | bifunctional maltose regulon transcriptional repressor/cystathionine beta‑lyase MalY |
| Reads supporting (aligned to +/- strand): ref base T (9/0); new base C (0/11); total (9/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.95e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.02e-05 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTGGTGTATGGCCCTTCTGTCATCTATATGGTTTCAGAACTGATTCGTCAGTGGTCTGAAACAGGTGAAGGCGTGGTGATCCACACACCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAGCGCACAGTAATGCCCGTTGCTTTAGAGAA > NZ_CP009273/1695480‑1695638 | ggtggtGTATGGCCCTTCTGTCATCTTTATGGTTTCAGAACTGATTCGTCAGTGGTCTGAAACAGGTGAAGGCGTGGTGATCCACACAcc > 1:727898/1‑90 (MQ=255) gtggtgTATGGCCCTTCTGTCATCTATATGGTTTCAGAACTGATTCGTCAGTGGTCTGAAACAGGTGAAGGCGTGGTGATCCACACAccc > 2:815153/1‑90 (MQ=255) cccTTCTCTCATCTATTTGGTTTAAGAACTGATTCGTCGGTGGTCAAAAACGGGTGAAGGGGTGGTGACCCACACACCCGCCTATGACGc < 2:620775/90‑1 (MQ=255) ccTTCTGTCATCTATATGGTTTCAGAACTGATTCGTCAGTGGTCTGAAACAGGTGAAGGCGTGGTGATCCACACACCCGCCTATGACGCa > 2:331915/1‑90 (MQ=255) tttatgTGTTTTAAGAACTGTTTCGTGAGGGGTCTAAAACGGGGGAGGGGGTGGTGACCCCCACCCCCGCCTATGACGCATTTTACAAgg < 1:802661/88‑1 (MQ=255) ttataTGTTTTAAGAACTGTTTCGTCAGGGGTCTGAAACAGGGGAAGGCGTGGTGACCCACACACCCGCCTATGACGCATTTTACAAGGc < 2:797217/89‑1 (MQ=255) atatGGTTTCAGAACTGATTCGTCAGTGGTCTGAAACAGGTGAAGGCGTGGTGATCCACACACCCGCCTATGACGCATTTTACAAGGCCa > 1:628806/1‑90 (MQ=255) gTTTCAGAACTGATTCGTCAGTGGTCTGAAACAGGTGAAGGCGTGGTGATCCACACACCCGCCTATGACGCATTTTACAAGGCCATTGaa > 2:545895/1‑90 (MQ=255) gTTTCAGAACTGATTCGTCAGTGGTCTGAAACAGGTGAAGGCGTGGTGATCCACACACCCGCCTATGACGCATTTTACAAGGCCATTGaa > 2:461259/1‑90 (MQ=255) ttCAGAACTGTTTCGTCGGTGGTCTAAAAAGGGGGAGGGGGTGGTGACCCACCCCCCCGCCTATGACGCATTTTACAAGGCCATTGAAgg < 1:461259/90‑1 (MQ=255) aaCTGATTCGTCAGTGGTCTGAAACGGGTGAAGGGGGGGTGACCCACACCCCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAAcc < 2:376709/90‑1 (MQ=255) gATTCGTCAGTGGTCTGAAACAGGTGAAGGCGTGGTGATCCACACACCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAgcg > 1:738468/1‑90 (MQ=255) tttcttcAGTGGTCTAAAACAGGGGAAGGCGGGGTGACCCACACCCCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAgcgc < 2:602050/89‑1 (MQ=255) tcgtcgGTGGTCTGAAACGGGTGAAGGCGTGGTGACCCACACACCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAGCGcac < 2:284081/90‑1 (MQ=255) ccGTCAGTGGTGTGAAACGGGGGAGGGGGTGGGGACCCACCCCCCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAGCGcac < 1:59836/89‑1 (MQ=255) cTGAAACAGGTGAAGGCGTGGTGATCCACACACCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAGCGCACAGTAATGCCCg > 1:51216/1‑90 (MQ=255) taaaaCAGGGGAGGGGGTGGTGACCCCCCCCCCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAGCGCACAGTAATGCCCGt < 1:277447/88‑1 (MQ=255) tGAAAGAGGGGAGGGGGGGGTGACCCACCCCCCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAGCGCACAGTAATGCCCGt < 1:304808/90‑1 (MQ=255) aaaaCGGGAGAGGGGGTGGTGACCCCCCCCCCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAGCGCACAGTAATGCCCGtt < 1:815153/89‑1 (MQ=255) aGGCGTGGTGATCCACACACCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAGCGCACAGTAATGCCCGTTGCTTTAGAGaa > 2:501579/1‑90 (MQ=255) | GGTGGTGTATGGCCCTTCTGTCATCTATATGGTTTCAGAACTGATTCGTCAGTGGTCTGAAACAGGTGAAGGCGTGGTGATCCACACACCCGCCTATGACGCATTTTACAAGGCCATTGAAGGTAACCAGCGCACAGTAATGCCCGTTGCTTTAGAGAA > NZ_CP009273/1695480‑1695638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |