| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,430,446 | 0 | A | C | 58.3% | 8.9 / 10.6 | 12 | G235G (GGT→GGG) | ompN | porin OmpN |
| Reads supporting (aligned to +/- strand): ref base A (4/1); new base C (0/7); total (4/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.38e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGTATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTA > NZ_CP009273/1430370‑1430528 | tttCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAg > 2:660745/1‑90 (MQ=255) tGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCCCCACCCGCCGCAGTATg < 1:265661/90‑1 (MQ=255) aTGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCCCCCCCCGCCGCAGTATGGTTAAcc < 1:523980/90‑1 (MQ=255) aTGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGTATGGTTAAcc < 1:189984/90‑1 (MQ=255) tGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGTATGGTTAACCt > 1:201288/1‑90 (MQ=255) tGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGTATGGTTAACCt > 2:58787/1‑90 (MQ=255) tAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCCCCCCCCGCCGCAGTATGGTTAACCTGGTCATTGGTg < 1:55641/90‑1 (MQ=255) tAAATATAGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCCCCACCCGCCGCAGTATGGTTAACCTGGTCATTGGTg < 1:276103/90‑1 (MQ=255) tttGTTAGCATCGTTTTTTAGCCCAGCAGCCCCCGCGTCTGCTTTATCCCCCCCCGCCGCAGTATGGTTAACCTGGTCATTGGTGCGGTc < 2:201288/89‑1 (MQ=255) ccGTTTTTTAGCCCAGCAGTCCCCGCGTCTGCTTTATCCCCCCCCGCCGCAGTATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGgtg < 1:632484/89‑1 (MQ=255) cTGCTTTATCACCACCCGCCGCAGTATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGc > 2:35512/1‑90 (MQ=255) ttttACCCCCACCCGCCGCAGTATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTa < 2:413397/89‑1 (MQ=255) | TTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGTATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTA > NZ_CP009273/1430370‑1430528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |