| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,975,994 | 0 | C | G | 60.0% | 3.4 / 10.1 | 10 | intergenic (‑126/+41) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
| Reads supporting (aligned to +/- strand): ref base C (0/4); new base G (6/0); total (6/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGT‑GGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTC > NZ_CP009273/1975924‑1976070 | aTGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGTGGGTTTGGT‑GGGggaaaaaaat > 2:254605/1‑86 (MQ=255)aTGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGTGGGTTTGGG‑GGGggaaaaaaaa > 2:166496/1‑86 (MQ=255) gTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGGTATGGT‑GGGGAAAAAAACTaa > 1:148909/1‑90 (MQ=255) gACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGGTATGGG‑GGGGAAAAAAGCTAAAATGTTGCa > 1:101874/1‑90 (MQ=255) tgtgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGTGGGTTTTGTGGGGAAAAAAAGCAAAATTTTTG‑AGaaaa > 2:289594/1‑90 (MQ=255) aaCCGTTATGGCGGTTGGCTATGGT‑GGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTaa < 1:254605/90‑1 (MQ=255) aCCGTTATGGCGGTTGGCTATGGT‑GGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAAc < 1:40962/90‑1 (MQ=255) aCCGTTATGGCGGTTGGCTATGGT‑GGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAAc < 2:32034/90‑1 (MQ=255) aCCGTTATGGCGGTTGGCTATGGT‑GGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAAc < 2:32246/90‑1 (MQ=255) ttATGGCGGTTGGGTATGGG‑GGGGAAAAAAGCTAAATTTTTGCAGAAAAAAACAACAAACAAGGCGGTTCGCTTTTTTTTTGTAAAgggc > 1:677549/1‑88 (MQ=255) | ATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGT‑GGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTC > NZ_CP009273/1975924‑1976070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |