| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,636,048 | 0 | T | G | 54.5% | 3.9 / 10.2 | 11 | A52A (GCA→GCC) ‡ | rodZ | cytoskeleton protein RodZ |
| Reads supporting (aligned to +/- strand): ref base T (1/4); new base G (6/0); total (7/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGAATATGTACCAGACGCGCATAAGAGCGGATATATCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGTGCCTTATCTTCTTCAATGTCGCGTACCGTGGAAACCTTCAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTA > NZ_CP009273/2635980‑2636120 | ggAATATGTACCAGACGCGCATAAGAGCGGATATATCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGGGGCTTTTTTTTTTTAATGTcg > 1:287359/1‑90 (MQ=255) ccAGACGCGCATAAGAGCGGATATATCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGTGCCCTTTCTTTTTTCATGTCGCGGACCGTgg > 1:128824/1‑90 (MQ=255) cAGACGCGCATAAGAGCGGATATATCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGGGGCTTTTTTTCTTTTATTTTGCGTACCggggg > 1:342362/1‑89 (MQ=255) gACGCGCATAAGAGCGGATATATCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGGGGCTTTTTTTTTTTTATTTCGCGTACCCTGGgaa > 1:535317/1‑90 (MQ=255) cgcATAAGAGCGGATATATCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGGGGCTTTTCTTTTTCTATTTTGCGTACCGTGGGAACCtt > 2:289599/1‑90 (MQ=255) cGGATATATCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGGGGCTTATCTTTTTTTATTTCGCGTGCCGGGGGAAACTTCAGGCaaaag > 2:49318/1‑88 (MQ=255) atatatCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGTGCCTTATCTTCTTCAATGTCGCGTACCGTGGAAACCTTCAGGCAAAGTCGc < 1:230521/90‑1 (MQ=255) atatCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGTGCCTTATCTTCTTCAATGTCGCGTACCGTGGAAACCTTCAGGCAAAGTCGCTc < 2:570464/90‑1 (MQ=255) gAAGCAAGATCGGCGGGTGCCTTATCTTCTTCAATGTCGCGTACCGTGGAAACCTTCAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTa < 1:368037/90‑1 (MQ=255) gAAGCAAGATCGGCGGGTGCCTTATCTTCTTCAATGTCGCGTACCGTGGAAACCTTCAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTa < 2:128824/90‑1 (MQ=255) gAAGCAAGATCGGCGGGGGGCCTTTCTTCTTCAATTTCGCGTACCGTGGAAAACCTCAAGCAAAAACGCCCGGCAACCGCCCGCTGACTa > 1:645439/1‑90 (MQ=255) | GGAATATGTACCAGACGCGCATAAGAGCGGATATATCCGCGCAGGAATGTTGAAGCAAGATCGGCGGGTGCCTTATCTTCTTCAATGTCGCGTACCGTGGAAACCTTCAGGCAAAGTCGCTCGGCAACGGCCTGCTGACTA > NZ_CP009273/2635980‑2636120 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |