| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,909,799 | C→T | intergenic (‑8/+89) | proQ ← / ← msrC | RNA chaperone ProQ/L‑methionine (R)‑S‑oxide reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,909,799 | 0 | C | T | 77.8% | 57.0 / 13.1 | 27 | intergenic (‑8/+89) | proQ/msrC | RNA chaperone ProQ/L‑methionine (R)‑S‑oxide reductase |
| Reads supporting (aligned to +/- strand): ref base C (4/2); new base T (10/11); total (14/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.67e-01 | |||||||||||
GTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTTATCCG > NZ_CP009273/1909723‑1909883 | gTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACgg > 2:459301/1‑90 (MQ=255)gTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACgg > 2:307907/1‑90 (MQ=255) ggggAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGAc > 2:578427/1‑90 (MQ=255) ggAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGt > 2:677839/1‑90 (MQ=255) tCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCcaacaa > 1:702587/1‑90 (MQ=255) ccAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAgcgc < 1:335905/90‑1 (MQ=255) ccAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAgcgc < 2:117666/90‑1 (MQ=255) gAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAgg > 1:521733/1‑90 (MQ=255) gcgATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGa > 2:674224/1‑90 (MQ=255) cgATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGaa > 1:581513/1‑90 (MQ=255) ttACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAg < 1:677839/90‑1 (MQ=255) aCTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGc < 1:462767/90‑1 (MQ=255) tcttTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCTAACAAGCGCAGGCATGAACAGGCGTc < 1:518082/90‑1 (MQ=255) gCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCATGCATGAACAGGCGTCATTATAAt > 2:186694/1‑90 (MQ=255) tATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGa > 2:450364/1‑90 (MQ=255) aTTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGAc > 2:26891/1‑90 (MQ=255) aTTCAACTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGAc > 1:107524/1‑90 (MQ=255) aTTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGAc > 2:677512/1‑90 (MQ=255) cTTAGGTTGATTTTCCATGAAATTTTCTGATTACAACGGACTTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATc < 2:309212/90‑1 (MQ=255) ggTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTa < 2:415361/90‑1 (MQ=255) ggTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTa < 1:45232/90‑1 (MQ=255) ggTTGATTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTa < 2:87167/90‑1 (MQ=255) ggTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTa < 1:585586/90‑1 (MQ=255) aTTTTCCATGAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGc > 2:317009/1‑90 (MQ=255) aTGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTTa < 2:581513/90‑1 (MQ=255) gAAATTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTTATc < 1:674224/90‑1 (MQ=255) aaTTTTCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTTATCCg < 1:578427/90‑1 (MQ=255) | GTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTTATCCG > NZ_CP009273/1909723‑1909883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |