New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	2282398 =	NA (NA)	16 (0.920)	13/168	0.2	100%	pseudogene (3/2532 nt)	yejO	autotransporter YejO
	?	NZ_CP009273	= 3628486	0 (0.000)					coding (286/1053 nt)	yhiM	DUF2776 domain‑containing protein

CGTTAATACGTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGCAGGCAATGATGTGATGGCAGACGAGTTTGTCGCCGGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGG  >  NZ_CP009273/3628401‑3628570                                                                                      |                                                                                     cgTTAATACGTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaa                                                                                  >  2:33904‑M2/1‑86 (MQ=255)          gTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaat                                                                         <  2:451676‑M2/90‑14 (MQ=255)                  aTACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcgggg                                                                 <  2:15241‑M2/90‑22 (MQ=255)                              ccATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcg                                                     <  1:477135‑M2/90‑34 (MQ=255)                                     tGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgact                                              >  2:171533‑M2/1‑50 (MQ=255)                                           tGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtca                                        <  1:138990‑M2/90‑47 (MQ=255)                                                    aaTTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttc                               <  1:17577‑M2/90‑56 (MQ=255)                                                    aaTTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggggcgaataagcggggaaattcttctcggctgactcagtcatttcatttc                               <  2:293710‑M2/90‑56 (MQ=255)                                                           aCCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt                        <  2:202429‑M2/90‑63 (MQ=255)                                                                      gggTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt             <  1:328589‑M2/90‑74 (MQ=255)                                                                        gTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt           <  2:20022‑M2/90‑76 (MQ=255)                                                                          tGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt         <  2:70570‑M2/90‑78 (MQ=255)                                                                           gggCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc        <  2:98583‑M2/90‑79 (MQ=255)                                                                             gCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc      >  1:98583‑M2/1‑10 (MQ=255)                                                                                 tGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt  <  1:367950‑M2/90‑85 (MQ=255)                                                                                 tGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt  <  2:101706‑M2/90‑85 (MQ=255)                                                                                      |                                                                                     CGTTAATACGTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGCAGGCAATGATGTGATGGCAGACGAGTTTGTCGCCGGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGG  >  NZ_CP009273/3628401‑3628570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.