| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,927,669 | 0 | G | C | 52.6% | 18.2 / 28.9 | 19 | A398G (GCG→GGG) | edd | phosphogluconate dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (8/1); new base C (0/10); total (8/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.19e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.68e-05 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTTTCCGCCCCTTCCCGCCAGTCCAGTTCACCATTATTCAGCCATGGTTCAAGGGTATAACGAGACAGACCAAAACCTGCCACCGT > NZ_CP009273/1927587‑1927748 | cccGTTTAACTTTTTTCCCCCCCCATGAGGAGAAAAGGTTTGTTCGAAGGAAGCGATCCCTTTGCTGTGGAGTGTTTTTTCCCCCCCtcc < 1:423992/89‑3 (MQ=255) ccGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTTTCCGCCCCTTcc > 1:281377/1‑90 (MQ=255) ccGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTTTCCGCCCCTTcc > 1:372869/1‑90 (MQ=255) ccGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTTTCCGCCCCTTcc > 1:484831/1‑90 (MQ=255) ccGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTTTCCGCCCCTTcc > 1:57901/1‑90 (MQ=255) ttAACCTTTTTGCCCCCCCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACTTTGCTGTCGAGTGTTTTTCCCCCCCCTTCCCGcc < 1:199595/90‑1 (MQ=255) taaaCTCTTTTGCCCCCCCAGGAGGAGAAAAAGGTTGTTCAAAGGAAGCGATCACATTGCTGTCGAGTGTTTTTCCCCCCCCTTCCCGcc < 1:169622/88‑1 (MQ=255) tAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTTTCCGCCCCTTCCCGcca > 1:275884/1‑90 (MQ=255) tGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTTTCCGCCCCTTCCCGCCAGTCCAGTTc < 2:372869/90‑1 (MQ=255) ccccaTGAGGAGAAAAAGTTTGTCCGAAGGAAGCGACCACTTTGCTGTGGTGTTTTTTTCCCCCCCCTCCCCGCCAGTCCAGTTCACCat < 1:435516/88‑1 (MQ=255) caccaTGATGAGAAAAAGGTTTTTCGAAGGAAGCGATCACTTTGCTGTGGAGTGATTTTCCCCCCCCTTCCCGCCAGTCCAGTTCACCat < 2:281377/90‑1 (MQ=255) tgatgaGAAAAGGGTTGTTCGAAGGAAGCGATCACTTTGCTGTCGAGTGTTTTTTCCCCCCCTTCCCGCCAGTCCAGTTCACCATTATTc < 1:142433/90‑1 (MQ=255) tgaggaGAGAAGGGTTGTTCGAAGGAAGCGATCCCTTTCCTGTGGAGTGTTTTTCCCCCCCCTTCCCGCCAGTCCAGTTCACCATTATTc < 1:426964/90‑1 (MQ=255) gagaAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTTTCCGCCCCTTCCCGCCAGTCCAGTTCACCATTATTCAGCCAt > 1:481729/1‑90 (MQ=255) ttCGAAGGAAGCGATCCCTTTGTTGTCGAGTTTTTTTCCCCCCCCTCCCCGCCAGTCCAGTTCACCATTATTCAGCCATGGCTCAAGGGt < 2:484831/90‑1 (MQ=255) ttGCTGTCGAGTGATTTTTCCGCCCCTTCCCGCCAGTCCAGTTCACCATTATTCAGCCATGGTTCAAGGGTATAACGAGACAGACCaaaa > 1:427202/1‑90 (MQ=255) gCTGTCGAGTGATTTTTCCGCCCCTTCCCGCCAGTCCAGTTCACCATTATTCAGCCATGGTTCAAGGGTATAACGAGACAGACCAAAAcc > 1:213627/1‑90 (MQ=255) gAGTGTTTTTCCCCCCCCTCCCCGCCAGTCCAGTTCACCATTATTCAGCCATGGTTCAAGGGTATAACGAGACAGACCAAAACCTGCCAc < 1:461919/90‑1 (MQ=255) tatttttcCCCCCCCTTCCCGCCAGTCCAGTTCACCATTATTCAGCCATGGTTCAAGGGTATAACGAGACAGACCAAAACCTGCCACCGt < 2:229272/87‑1 (MQ=255) | ACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTTTCCGCCCCTTCCCGCCAGTCCAGTTCACCATTATTCAGCCATGGTTCAAGGGTATAACGAGACAGACCAAAACCTGCCACCGT > NZ_CP009273/1927587‑1927748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |