| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,679,399 | 0 | G | T | 55.6% | 10.7 / 24.7 | 18 | N1045K (AAC→AAA) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| Reads supporting (aligned to +/- strand): ref base G (5/3); new base T (0/10); total (5/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.54e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.74e-03 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGC > NZ_CP009273/3679320‑3679487 | gATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTgc > 1:40403/1‑90 (MQ=255)gATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTgc > 2:271714/1‑90 (MQ=255) ggATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTGCGCTCCCGCcac > 2:21629/1‑90 (MQ=255) cgcgGTTTGTTTTGGGCGCGTGAAGGCCCCCCCGGCCCAGCCCCCCCCGGCCCCCCCGACCATTTTCCCGTGCGCCCCCGCCACATCAcc < 1:233999/90‑1 (MQ=255) cgcgGCTTGTTTTGGGTGGGTGAATGCCCCCCCGAGCCAGCCCCCCCCAGCCCCCCCGACCATTTTTCCGTGCCCCCCCGCCACATCAcc < 1:138849/90‑1 (MQ=255) cgcgGCTTGGTTTGGGTGGGTGAAGGCGCCCACGACCCAGCCCCCCCCAGCCCCCCCGCCCATTTTTCCGTGCGCTCCCGCCACATCAcc < 1:21629/90‑1 (MQ=255) ttttGGGGCGTGAAGGCGCCCGCGACCCAGACGCCCCCGGCCCCCACGCCAAGTTTTCCGTGCGCCCCCGCCACATCACCGGTATGGCaa < 1:184007/90‑1 (MQ=255) ggTGCGTGAATGCGACCACGAGCCAGCCGCCCCCAGCTCCCACGACCATTTTCCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGa < 2:73144/90‑1 (MQ=255) gtaaaTGCCCCCACGAGCCAGACCCCCCCCGCCCCCCCGCCCATTTTTCCGTGCCCCCCCGCCACATCACCGGTATGGCAAACGACAGGt < 2:385317/87‑1 (MQ=255) gTGAATGCGCCCACGAGCCAGCCGCCCCCCCCCCCCACGACCATTTTTCCGTGCCCTCCCGCCACATCACCGGTATGGCAAACGACAGGt < 2:313339/90‑1 (MQ=255) cgcccACGCCCCAGCCCCCCCCCGCCCCCACGCCCATTTTCCCGTGCGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTg < 1:126324/87‑1 (MQ=255) cgcccACGAGCCAGACGCCCCCAGCCCCCACGACCATTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTg < 2:40403/87‑1 (MQ=255) ccgcgCCAGACGCACCCAGCCCCCACGCCCAGTTTTCCGGGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAc < 2:195337/86‑1 (MQ=255) ccGACCCAGCCCCCCCCAGCCCCCACGACCATTTTTCCGTGCGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAc < 2:372184/89‑1 (MQ=255) aCGACCCAGCCCCCCCCAGCCCCCCCGCCCGTTTTCCCGGCCCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAc < 1:483367/90‑1 (MQ=255) aCCCAGCTCCCACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGcc > 1:159322/1‑90 (MQ=255) ccACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCgag > 1:80678/1‑90 (MQ=255) aGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGc < 2:80678/90‑1 (MQ=255) | GATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGC > NZ_CP009273/3679320‑3679487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |