| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3512437 = | 0 (0.000) | 23 (1.190) | 18/170 | 0.1 | 100% | intergenic (‑14/+387) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ |
| ? | NZ_CP009273 | = 3646590 | NA (NA) | pseudogene (3/379 nt) | BW25113_RS18165 | hypothetical protein | |||||
CAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGAT > NZ_CP009273/3512363‑3512511 | cAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaa > 2:52525‑M1/1‑79 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGAc < 2:529306‑M1/7‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGAc > 1:529306‑M1/64‑70 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAAccc < 1:308977‑M1/27‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCt < 2:69803‑M1/30‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCt > 1:11388‑M1/61‑90 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCt < 2:387776‑M1/30‑1 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTc < 1:50085‑M1/32‑1 (MQ=255) ccATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaataagcggggaaattcttctcg < 2:241090‑M1/90‑33 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGACTAt > 1:314169‑M1/51‑60 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGACTAt < 2:314169‑M1/10‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCagagag < 1:351440‑M1/42‑1 (MQ=255) aaCCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:127790‑M1/1‑48 (MQ=255) aaCCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcag < 1:13358‑M1/90‑43 (MQ=255) ccAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 2:430932‑M1/90‑45 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAgg > 2:351440‑M1/40‑90 (MQ=255) gatctcatatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGaa < 1:94459‑M1/58‑1 (MQ=255) atTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttc > 1:75233‑M1/1‑36 (MQ=255) catatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 1:72740‑M1/63‑1 (MQ=255) catatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 2:458649‑M1/63‑1 (MQ=255) tatcagggacttgttcgcgctttccCTAAGCCTATTCGTTAATGATAAACCCGGTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc > 2:196299‑M1/26‑90 (MQ=255) tatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc > 1:52246‑M1/26‑90 (MQ=255) tatcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc > 1:1278‑M1/26‑90 (MQ=255) ttCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt > 1:91290‑M1/1‑29 (MQ=255) atcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAcc < 2:447779‑M1/66‑1 (MQ=255) atcagggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAcc > 1:253221‑M1/25‑90 (MQ=255) agggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCa < 1:390968‑M1/69‑1 (MQ=255) gggacttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCAt < 1:329314‑M1/70‑1 (MQ=255) acttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAg > 2:98697‑M1/18‑90 (MQ=255) ttgttcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGat < 1:272192‑M1/75‑1 (MQ=255) | CAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGAT > NZ_CP009273/3512363‑3512511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |