New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 2282398 = | NA (NA) | 44 (2.280) | 23/170 | 0.0 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
? | NZ_CP009273 | = 3628486 | 0 (0.000) | coding (286/1053 nt) | yhiM | DUF2776 domain‑containing protein |
GGCGTTAATACGTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGCAGGCAATGATGTGATGGCAGACGAGTTTGTCGCCGGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCA > NZ_CP009273/3628399‑3628575 | ggcgTTAATACGTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGgg < 2:197118‑M2/90‑3 (MQ=255) cgTTAATACGTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaa > 2:173333‑M2/1‑86 (MQ=255) gTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaat < 1:363888‑M2/90‑14 (MQ=255) gTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaat < 1:48733‑M2/90‑14 (MQ=255) tttACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataa < 1:313775‑M2/90‑16 (MQ=255) aCATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaa < 1:57783‑M2/90‑24 (MQ=255) ttGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaatt < 2:67408‑M2/90‑27 (MQ=255) gTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggggcgaataagcggggaaatttt < 2:301940‑M2/90‑29 (MQ=255) ttCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattctt < 2:272031‑M2/90‑30 (MQ=255) ccccATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttct < 1:139669‑M2/90‑32 (MQ=255) ccccATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttct < 1:216119‑M2/90‑32 (MQ=255) ccccATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttct > 2:204812‑M2/1‑59 (MQ=255) ggCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactc < 1:157515‑M2/90‑42 (MQ=255) aTGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 2:288051‑M2/90‑46 (MQ=255) ggTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca < 1:66229‑M2/90‑52 (MQ=255) aaTTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttc < 2:473‑M2/90‑56 (MQ=255) aaTTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggggcgaataagcggggaaattcttctcggctgactcagtcatttcatttc < 1:68132‑M2/90‑56 (MQ=255) aCCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt < 2:72836‑M2/90‑63 (MQ=255) cATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt < 2:81087‑M2/90‑65 (MQ=255) aTGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg < 1:53926‑M2/90‑66 (MQ=255) tGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga < 1:188352‑M2/90‑67 (MQ=255) gggTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 2:70757‑M2/90‑74 (MQ=255) tGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt < 1:326424‑M2/90‑78 (MQ=255) tGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt < 2:257166‑M2/90‑78 (MQ=255) gggCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc < 2:197541‑M2/90‑79 (MQ=255) gggCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgac > 1:383414‑M2/1‑12 (MQ=255) gggCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgac < 2:383414‑M2/51‑40 (MQ=255) aCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc > 2:216119‑M2/1‑8 (MQ=255) tGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt < 1:493287‑M2/90‑85 (MQ=255) tGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt < 2:116195‑M2/90‑85 (MQ=255) tGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt < 2:377651‑M2/90‑85 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa < 1:430044‑M2/90‑87 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa < 2:103387‑M2/90‑87 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:25692‑M2/1‑3 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:301940‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:415544‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:430044‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:219019‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:176172‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:339727‑M2/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:349763‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 1:239575‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:536977‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:250053‑M2/90‑90 (MQ=255) | GGCGTTAATACGTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGCAGGCAATGATGTGATGGCAGACGAGTTTGTCGCCGGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCA > NZ_CP009273/3628399‑3628575 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |