New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 2282398 = | NA (NA) | 38 (1.450) | 12/170 | 0.6 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
? | NZ_CP009273 | = 3628486 | 0 (0.000) | coding (286/1053 nt) | yhiM | DUF2776 domain‑containing protein |
GTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGCAGGCAATGATGTGATGGCAGACGAGTTTGTCGCCGGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCA > NZ_CP009273/3628410‑3628575 | gTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaat < 1:213523‑M2/90‑14 (MQ=255) gTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaat < 2:247740‑M2/90‑14 (MQ=255) gTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaat < 2:212227‑M2/90‑14 (MQ=255) ttGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaatt < 2:126941‑M2/90‑27 (MQ=255) ttGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaatt < 1:377624‑M2/90‑27 (MQ=255) gTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattct < 1:293680‑M2/90‑29 (MQ=255) gTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattct < 1:323772‑M2/90‑29 (MQ=255) ccccATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttct < 2:223464‑M2/90‑32 (MQ=255) attGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctga < 1:252585‑M2/90‑39 (MQ=255) tGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgact > 2:354698‑M2/1‑50 (MQ=255) aTGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 1:203588‑M2/90‑46 (MQ=255) aTGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 1:373286‑M2/90‑46 (MQ=255) aTGCGGGGAAAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataaacggggaaattcttctcgggggactcagtc < 1:357117‑M2/90‑46 (MQ=255) gTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat < 2:698886‑M2/90‑53 (MQ=255) tGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga < 2:426815‑M2/90‑67 (MQ=255) tGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga < 2:159531‑M2/90‑67 (MQ=255) tGATATGGGGTTGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga < 2:17253‑M2/90‑67 (MQ=255) ttGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt < 1:635320‑M2/90‑77 (MQ=255) tGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt < 2:609616‑M2/90‑78 (MQ=255) tGGGCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt < 2:384002‑M2/90‑78 (MQ=255) gggCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc < 2:40264‑M2/90‑79 (MQ=255) gggCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc < 1:133238‑M2/90‑79 (MQ=255) gggCACTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc < 2:332900‑M2/90‑79 (MQ=255) tGTTAGggaaggtgcgagtaagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt < 1:61353‑M2/90‑85 (MQ=255) tGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgt < 2:454190‑M2/90‑85 (MQ=255) gTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccggttttttctcccgta < 1:581547‑M2/90‑86 (MQ=255) gTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgta < 1:235449‑M2/90‑86 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa < 2:225132‑M2/90‑87 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa > 1:347035‑M2/1‑4 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:387617‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 1:635117‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:635117‑M2/56‑54 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:735709‑M2/90‑89 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:495535‑M2/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 1:30515‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 1:85872‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcag < 2:588087‑M2/44‑44 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:588087‑M2/1‑1 (MQ=255) | GTTTTACAATACATTGTTCCCCATTATTGGCTATGCGGGGTCAATTATCACCATGATATGGGGTTGGGCACTGTTAGCAGGCAATGATGTGATGGCAGACGAGTTTGTCGCCGGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCA > NZ_CP009273/3628410‑3628575 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |