| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3629105 | 1 (0.040) | 29 (1.210) | 17/170 | 0.2 | 96.7% | coding (905/1053 nt) | yhiM | DUF2776 domain‑containing protein |
| ? | NZ_CP009273 | 3645397 = | NA (NA) | pseudogene (747/747 nt) | BW25113_RS18155 | hypothetical protein | |||||
AAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGG > NZ_CP009273/3629016‑3629194 | aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTG > 1:339247‑M1/1‑90 (MQ=255) aGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaa < 1:318537‑M1/90‑4 (MQ=255) tGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtg > 2:310817‑M1/1‑83 (MQ=255) aCTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcgg > 2:369466‑M1/1‑72 (MQ=255) aCTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcgg > 1:589281‑M1/1‑72 (MQ=255) aTGGAGACTTCCCTGTTGGTTAGCCAACAAAATCCCGATGATTCCCGTCTCCCCCTGCCTGTTTTGgaaggtgcgaataagcggggaaat < 1:595436‑M1/90‑25 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaattcttcttg > 1:616627‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 1:223560‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 2:89268‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 2:628910‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 2:577765‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 1:628201‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggg < 1:401548‑M1/78‑20 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggg > 2:401548‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATg > 2:228207/1‑90 (MQ=255) gTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcg > 1:401208‑M1/1‑58 (MQ=255) gTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcag < 2:161295‑M1/90‑43 (MQ=255) ttAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagt > 2:435896‑M1/1‑47 (MQ=255) tAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 2:628201‑M1/90‑45 (MQ=255) aTACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct > 1:493148‑M1/1‑35 (MQ=255) tACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt > 2:578017‑M1/1‑34 (MQ=255) gatgatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 1:425424‑M1/1‑30 (MQ=255) gatgatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:60907‑M1/1‑30 (MQ=255) gatgatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:286017‑M1/1‑30 (MQ=255) gatgatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaat < 2:5700‑M1/54‑25 (MQ=255) gatgatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaat > 1:5700‑M1/1‑30 (MQ=255) cACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt > 2:430512‑M1/1‑15 (MQ=255) cACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt > 2:174822‑M1/1‑15 (MQ=255) cctgcctgTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc > 1:679162‑M1/1‑13 (MQ=255) gcctgTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc > 2:107881‑M1/1‑10 (MQ=255) gTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgta > 2:84932‑M1/1‑6 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 2:535519‑M1/1‑1 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 1:10964‑M1/1‑1 (MQ=255) | AAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGG > NZ_CP009273/3629016‑3629194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |