Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3639473	3639835	363	2 [1]	[1] 2	[rlmJ]–[gorA]	[rlmJ],[gorA]

GACCGGTATTCGCAAAATTCTGCAAATTGAACTGGCGGTACTGCCAGACAGCGATCGCCGTGGCATGACCGCTTCCGGCATGATTGTGATTAACCCGCCGTGGAAACTGGAACAAC  >  NZ_CP009273/3639383‑3639498                                                                                          |                           gACCGGTATTCGCAAAATTCTGCAAATTGAACTGGCGGTACTGCCAGACAGCGATCGCCGTGGCATGACCGCTTCCGGCATGATTGTGAt                            >  1:471166/1‑90 (MQ=255)                           ttGAACTGGCGGTACTGCCAGACAGCGATCGCCGTGGCATGACCGCTTCCGGCATGATTGTGATTAACCCGCCGTGGAAACTGGaacaac  <  2:253822/90‑1 (MQ=255)                                                                                          |                           GACCGGTATTCGCAAAATTCTGCAAATTGAACTGGCGGTACTGCCAGACAGCGATCGCCGTGGCATGACCGCTTCCGGCATGATTGTGATTAACCCGCCGTGGAAACTGGAACAAC  >  NZ_CP009273/3639383‑3639498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑