| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,199,803 | 0 | T | A | 53.8% | 5.3 / 17.3 | 13 | intergenic (‑188/‑19) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base T (2/4); new base A (7/0); total (9/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.10e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCAT > NZ_CP009273/3199731‑3199892 | tatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAA‑AAAAACAAAAAATGGAGTTGc > 2:236557/1‑90 (MQ=255)tatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGGATTTTTTCAGAC‑AAAAAAAAAAAAAGGAGGTgg > 1:128253/1‑89 (MQ=255)tatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGAATTTTTTCAAAA‑AAAAAAAAAAAAAGGAGGTgg > 1:11766/1‑89 (MQ=255) ggTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGAGTTGCCatgatg < 2:56689/90‑1 (MQ=255) aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGAGTTGCCATGATGAGCGaa < 2:239914/90‑1 (MQ=255) aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGAGTTGCCATGATGAGCGaa < 2:76261/90‑1 (MQ=255) acaTTTTTAGTGGTAGTTTGTGGCGGGGAATTTTTTCCGAC‑AAAAAAAAAAAAAGGGGGTGGCCTGATGAGGGAAAGAAATAAACaaaaa > 2:363056/1‑87 (MQ=255) agaggTAGTTTGTGGCGGTGAATTTTTTCTGACAAAAAAAAAAAAATGGGTTTGCC‑TTATGAGGGAAAAAAAAAAGCAAAAAGCAGGGaa > 2:535842/4‑90 (MQ=255) tAGTTTGTGGCGGGGGATTTTTTCAGAC‑AAAAAAAAAAAATGGGGGTGGCCTGGTGGGCGAAAATAATAAAAAACAGGCAGGGAATAAGt > 1:250196/1‑90 (MQ=255) gTTTGTGGCGGTGAATTTTTCCAGAC‑AAAAAAAAAAAATGGGGGTGCCATGATGAGCGGAAGAAATAAGAAAAAAGCAGTGGATAAATTg > 2:58142/1‑90 (MQ=255) aGAC‑AAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTa > 2:170756/1‑90 (MQ=255) aGAC‑AAATACAAAAACTGGAGATGCCATGATGAGCGAAAGTAATAAGCAACAGGCa < 1:402988/56‑1 (MQ=255) aGAC‑AAATACAAAAACTGGAGATGCCATGATGAGCGAAAGTAATAAGCAACAGGCa > 2:402988/1‑56 (MQ=255) tACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCAt < 2:128253/90‑1 (MQ=255) | TATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCAT > NZ_CP009273/3199731‑3199892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |