| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 176,296 | C→G | R191R (CGC→CGG) | dgt → | dGTPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 176,296 | 0 | C | G | 76.0% | 51.8 / 15.0 | 25 | R191R (CGC→CGG) | dgt | dGTPase |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base G (10/9); total (13/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGGGACGGGGAAGAACCGCTTAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGCCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGTCCGGCGTGGTGGCGTG > NZ_CP009273/176209‑176381 | acgggacgggGAAGAGCCGCTTAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCt < 1:184453/90‑1 (MQ=255) gggacgggGAAGAACCGCTTAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTgg < 1:495940/90‑1 (MQ=255) cgggGAAGAACCGCTTAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCa > 2:80415/1‑90 (MQ=255) cgggGAAGAACCGCTTAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGCCTGGTGCa < 1:521530/90‑1 (MQ=255) gggAAGAACCGCTTAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCATa < 2:279539/90‑1 (MQ=255) gaaCCGCTTAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGCCTGGTGCATACATTg > 2:91925/1‑90 (MQ=255) gCTTAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCg > 1:248523/1‑90 (MQ=255) tAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCGGAt < 2:477056/90‑1 (MQ=255) aGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCGGATGAAtc > 2:552275/1‑90 (MQ=255) cggcgCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCGGATGAATCTCAcc < 2:429130/90‑1 (MQ=255) cAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGc < 1:80415/90‑1 (MQ=255) tATGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTAttt > 1:9802/1‑90 (MQ=255) aTGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTAtttt < 1:434538/90‑1 (MQ=255) aTGTCATTTTGAGGGGAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTAtttt < 2:173220/90‑1 (MQ=255) aTTTTGAGGGGAATGCACAAGGCATTCGCCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGCTGGCGGTATTTTAAAat > 1:296241/1‑90 (MQ=255) tttGAGGGGAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAatat > 1:340764/1‑90 (MQ=255) tGAGGGGAATGCACAAGGCATTCGCCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATAc < 1:224776/90‑1 (MQ=255) gggAATGCACAAGGCATTCGCCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGt < 1:20768/90‑1 (MQ=255) gAATGCACAAGGCATTCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGTcc > 1:26541/1‑90 (MQ=255) aGGCATTCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGTCCGGCgtggtg > 1:73106/1‑90 (MQ=255) aTTCGCCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGTCCGGCGTGgtggcgt > 1:246239/1‑90 (MQ=255) ttCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGTCCgg > 1:564555/1‑78 (MQ=255) ttCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGTCCgg < 2:564555/78‑1 (MQ=255) ttCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGTCCGGCGTGgtggcgtg > 1:102403/1‑90 (MQ=255) ttCGGCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGTCCGGCGTGgtggcgtg > 1:80740/1‑90 (MQ=255) | ACGGGACGGGGAAGAACCGCTTAACGAGCTGCGGCGCAAGATTCGTCAGGACTTATGTCATTTTGAGGGGAATGCACAAGGCATTCGCCTGGTGCATACATTGATGCGGATGAATCTCACCTGGGCACAGGTTGGCGGTATTTTAAAATATACCCGTCCGGCGTGGTGGCGTG > NZ_CP009273/176209‑176381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |