| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,402,000 | A→G | I18T (ATC→ACC) | dgcM ← | diguanylate cyclase DgcM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,402,000 | 0 | A | G | 100.0% | 52.9 / NA | 18 | I18T (ATC→ACC) | dgcM | diguanylate cyclase DgcM |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (5/13); total (5/13) | |||||||||||
CTGACTAAACGTGAGGTCTTGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGATCCAGACAGGACTGGTGAGTAAGTCCAGGGTATTGAAGTTGTGCGTAATCATTGAGATCCCGTTATTTTTAT > NZ_CP009273/1401921‑1402072 | cTGACTAAACGTGAGGTCTTGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAgg < 2:264328/90‑1 (MQ=255) gACTAAACGTGAGGTCTTGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGAc > 2:477147/1‑90 (MQ=255) tGAGGTCTTGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTa < 1:477147/90‑1 (MQ=255) tGAGGTCTTGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTa < 2:259113/90‑1 (MQ=255) tCTTGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTAAGTcc < 2:274772/90‑1 (MQ=255) ttGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTAAGTCCAg < 1:215832/90‑1 (MQ=255) ttGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTAAGTCCAg < 1:126836/90‑1 (MQ=255) ttGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTAAGTCCAg < 2:251424/90‑1 (MQ=255) gTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTAAGTCCAGGGTATTGAAGt > 1:1778/1‑90 (MQ=255) tttCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTAAGTCCAGGGTATTGAAGtt < 1:156462/90‑1 (MQ=255) ttCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAgg < 2:549818/59‑1 (MQ=255) ttCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAgg > 1:549818/1‑59 (MQ=255) gccgcGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTAAGTCCAGGGTATTGAAGTTGTGc < 2:222003/90‑1 (MQ=255) aaaTTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTa > 2:39377/1‑51 (MQ=255) aaaTTAACTGTTCCTCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTa < 1:39377/51‑1 (MQ=255) ccTCAAAGGGCGAAACGGTCAAGACAGGACTGGTGAGTAAGTCCAGGGTATTGAAGTTGTGCGTAATCATTGAGATCCCGTTATTTTTAt < 2:63082/90‑1 (MQ=255) tCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTAAGTCCAg > 2:172824/1‑44 (MQ=255) tCAAAGGGCGAAACGGTCCAGACAGGACTGGTGAGTAAGTCCAg < 1:172824/44‑1 (MQ=255) | CTGACTAAACGTGAGGTCTTGCATCAACAGTTTCGCCGCGCTATTGGCATAAATTAACTGTTCCTCAAAGGGCGAAACGATCCAGACAGGACTGGTGAGTAAGTCCAGGGTATTGAAGTTGTGCGTAATCATTGAGATCCCGTTATTTTTAT > NZ_CP009273/1401921‑1402072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |