Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3632574	3633914	1341	2 [0]	[0] 2	uspB–uspA	uspB,uspA

TACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTTTTGCTTTTTGGCGCG  >  NZ_CP009273/3633915‑3633966 |                                                    tACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTTTTGCTTTTTGgcgcg  >  1:78223/1‑52 (MQ=255) tACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTTTTGCTTTTTGgcgcg  <  2:78223/52‑1 (MQ=255) |                                                    TACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTTTTGCTTTTTGGCGCG  >  NZ_CP009273/3633915‑3633966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑