Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 3636066 3636143 78 2 [1] [1] 3 rsmJ 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ

AGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGCATCGCGCCCAAGTCCTGCAGTGGCATCCACCACATCCGGCAAATAAT  >  NZ_CP009273/3636104‑3636233
                                        |                                                                                         
aGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGCATCgcgc                                          >  1:64336/1‑90 (MQ=255)
                                        ccAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGCATCGCGCCCAAGTCCTGCAGTGGCATCCACCACATCCGGCAaataat  <  1:589992/90‑1 (MQ=255)
                                        ccAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGCATCGCGCCCAAGTCCTGCAGTGGCATCCACCACATCCGGCAaataat  >  2:245422/1‑90 (MQ=255)
                                        |                                                                                         
AGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGCATCGCGCCCAAGTCCTGCAGTGGCATCCACCACATCCGGCAAATAAT  >  NZ_CP009273/3636104‑3636233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: