Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1286136	1286196	61	4 [2]	[1] 3	rssB	two‑component system response regulator RssB

TGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTGGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGA  >  NZ_CP009273/1286064‑1286160                                                                        |                          tGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTGGGATGCAATGGTTGATAACCCTGCCGCa         >  1:109179/1‑90 (MQ=255)        aTCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTGGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGa  <  1:182033/90‑1 (MQ=255)                            cgcgTTGAGGAAGAGGAAAGGCTTTTTCGCGACTGGGATGCAATg                           <  1:76756/45‑1 (MQ=255)                            cgcgTTGAGGAAGAGGAAAGGCTTTTTCGCGACTGGGATGCAATg                           >  2:76756/1‑45 (MQ=255)                                                                        |                          TGTCTCTATCCCAGCATGTTTAATTCGCGCGTTGAGGAAGAGGAAAGGCTTTTTCGCGACTGGGATGCAATGGTTGATAACCCTGCCGCAGCGGCGA  >  NZ_CP009273/1286064‑1286160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑