| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,819,288 | 0 | C | T | 60.0% | ‑4.5 / 19.8 | 25 | intergenic (‑94/+109) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| Reads supporting (aligned to +/- strand): ref base C (7/3); new base T (0/15); total (7/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.50e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.62e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGC > NZ_CP009273/1819201‑1819371 | tCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCtt < 2:536778/90‑1 (MQ=255)tCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCtt < 2:268230/90‑1 (MQ=255) ggCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCtttttt > 2:56847/1‑90 (MQ=255) gTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACaa > 2:245358/1‑90 (MQ=255) gTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGGGATTTACGTTAGTGGTGATCAGGCTTTTTTTACaa > 1:647151/1‑90 (MQ=255) tCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTT‑GAGAAGagaaaaga > 1:171346/1‑90 (MQ=255) aTCGGCACCTGGGGTGTTTTACTTTAGTGGTGATCGGTTTTTTTTTACAACTTTTT‑GAGAAGAAAAAAAAAAACCGCCGATCCTGTCCAc < 1:212392/90‑1 (MQ=255) ccGGCAACTGGGGGATTTTAAGTTAGGGGTGATCGGGTTTTTTTTAAACCTGTTG‑GAGAAGAAAAAAAAAAACCGCCGATCCTGTCCAcc < 1:687086/89‑1 (MQ=255) aCTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTa > 2:106117/1‑90 (MQ=255) gttaTTTACGTTAGTGTTGACCAGTTTTTTTTTACAACTTTTT‑GAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCaa < 2:119699/87‑1 (MQ=255) gtgtTTTACTTTAGTGGTGATCAGGTTTTTTTTACAACTTTTT‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCaa < 2:638712/90‑1 (MQ=255) gtgtTTTACGTTAGTGGTGATCAGGTTTTTTTTACAACTTTTT‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCaa < 2:313130/90‑1 (MQ=255) gtattttACGTTGGTGGTGATCGGGTTTTTTTTACAACTGTTT‑GAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCaa < 2:601411/86‑1 (MQ=255) gTGATTTCCGTAAGGGGTGACCAGCTTTTTTTTACAACTTTTG‑GAAAAAAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCaa < 1:391707/90‑1 (MQ=255) gTGATTTACTTTAGTGGTGATCAGGTTTTTTTTACAACTGTTT‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCaa < 2:37933/90‑1 (MQ=255) gTGATTTACTTTAGGGGTGATCGGTTTTTTTTTACAATTTTTT‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCaa < 1:66680/90‑1 (MQ=255) gTGATTTACGTTAGTGGTGATCAGGTTTTTTTTACAACTGTTT‑GAGAAGAGAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCaa < 2:130156/90‑1 (MQ=255) tGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTT‑GAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAg < 2:272135/90‑1 (MQ=255) ttATGTTGGTGGTGATCGGTTTTTTTTTAAATTTGTTG‑GAAAAAAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAg < 1:606297/90‑1 (MQ=255) ttACTTTGGGGGTGA‑CAGGTTTTTTTTAAAAATTTTTGGAAAAAAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAg < 1:516571/90‑1 (MQ=255) ttACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGGAg > 2:604359/1‑90 (MQ=255) ctttAGTGGGGATCAGGTTTTTTTTACAACTGTTT‑GACAAGATAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTgg < 2:300580/88‑1 (MQ=255) aGTGGTGATCAGGCTTTTTTTACAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACaa > 2:545141/1‑90 (MQ=255) agcAGGTTTTTTTTAAAACTTTTT‑GAGAAGAGAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggc < 2:301987/88‑1 (MQ=255) aTCAGGTTTTTTTAACACTTTTTT‑GAAAAGAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggc < 2:457805/90‑1 (MQ=255) | TCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTT‑GAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGC > NZ_CP009273/1819201‑1819371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |