Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 1,560,820 | T→C | E193G (GAA→GGA) | dosC ← | diguanylate cyclase DosC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,560,820 | 0 | T | C | 100.0% | 50.2 / NA | 16 | E193G (GAA→GGA) | dosC | diguanylate cyclase DosC |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/7); total (9/7) |
TAAACCACAGGCCAAAATCAGCCTGGCTTAAAGGCAAACTACTGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTTCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGTTTTCCAGTAACGAGAAGATACGATAGTTTTCATC > NZ_CP009273/1560734‑1560902 | tAAACCACAGGCCAAAATCAGCCTGGCTTAAAGGCAAACTACTGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTcccc < 2:342242/90‑1 (MQ=255) cacaGGCCAAAATCAGCCTGGCTTAAAGGCAAACTACTGCCTAAATTAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGaa < 1:676166/90‑1 (MQ=255) cacaGGCCAAAATCAGCCTGGCTTAAAGGCAAACTACTGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGaa < 1:509867/90‑1 (MQ=255) acaGGCCAAAATCAGCCTGGCTTAAAGGCAAACTACTGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGaaa > 2:192688/1‑90 (MQ=255) caGGCCAAAATCAGCCTGGCTTAAAGGCAAACTACTGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAg > 2:449080/1‑90 (MQ=255) cAAAATCAGCCTGGCTTAAAGGCAAACTACTGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTg > 1:175481/1‑90 (MQ=255) cAAACTACTGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTttc > 2:584062/1‑90 (MQ=255) aaaCTACTGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTttct > 1:648901/1‑90 (MQ=255) tGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCgg < 1:390436/90‑1 (MQ=255) cTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGt < 1:158284/90‑1 (MQ=255) aaTCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGtttt > 1:274945/1‑90 (MQ=255) tCAGAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGTTTTcc < 2:162578/90‑1 (MQ=255) gAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGttt < 1:446612/84‑1 (MQ=255) gAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGttt > 2:446612/1‑84 (MQ=255) gAATCCAGCAGGATTTTATAGATAATATCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGTTTTCCAGt > 1:18602/1‑90 (MQ=255) taataTCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGTTTTCCAGTAACGAGAAGATACGATAGtttt > 2:79227/1‑90 (MQ=255) atCTATTCCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGTTTTCCAGTAACGAGAAGATACGATAGTTTTCATc < 2:648901/90‑1 (MQ=255) | TAAACCACAGGCCAAAATCAGCCTGGCTTAAAGGCAAACTACTGCCTAAATCAGAATCCAGCAGGATTTTATAGATAATATCTATTTCCCATGAAAGTATTGAGGCTATTTGCCGTTCTTTTTCTTCTTCGGCGTTTTCCAGTAACGAGAAGATACGATAGTTTTCATC > NZ_CP009273/1560734‑1560902 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |