| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,048,308 | T→C | F395F (TTT→TTC) | shiA → | shikimate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,048,308 | 0 | T | C | 100.0% | 13.6 / NA | 6 | F395F (TTT→TTC) | shiA | shikimate transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (4/2); total (4/2) | |||||||||||
AGTTATCGCTATAGTGGCGCTGGAGTCGGTTATCAGGTTGCCAGTGTGGTTGGCGGTGGATTTACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCCATTTATTTGCTGGCTG > NZ_CP009273/2048246‑2048384 | aGTTATCGCTATAGTGGCGCTGGAGTCGGTTATCAGGTTGCCAGTGTGGTTGGCGGTGGATTCACACCTTTTATTGCCGCTGCACtcatc > 2:428491/1‑90 (MQ=255) ggCGCTGGAGTCGGTTATCAGGTTGCCAGTGTGGTTGGCGGTGGATTCACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCggg > 2:89354/1‑90 (MQ=255) gcgcTGGAGTCGGTTATCAGGTTGCCAGTGTGGTTGGCGGTGGATTCACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCGGGa < 1:388390/90‑1 (MQ=255) cGGTTATCAGCTTGCCAGTGTGGTTGGCGGTGGATTCACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCGGGAACTGGCATAg > 2:29748/1‑90 (MQ=255) gtgGTTGGCGGTGGATTCACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCCATTTATTTgctg < 2:411984/90‑1 (MQ=255) ttGGCGGTGGATTCACACCTTCTATTGCCGCTGCACTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCCATTTATTTgctggctg > 2:218388/1‑90 (MQ=255) | AGTTATCGCTATAGTGGCGCTGGAGTCGGTTATCAGGTTGCCAGTGTGGTTGGCGGTGGATTTACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCCATTTATTTGCTGGCTG > NZ_CP009273/2048246‑2048384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |