| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,249,013 | T→C | R430R (CGT→CGC) | dinF → | MATE family efflux transporter DinF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,249,013 | 0 | T | C | 100.0% | 59.1 / NA | 20 | R430R (CGT→CGC) | dinF | MATE family efflux transporter DinF |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (15/5); total (15/5) | |||||||||||
CCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTAAAAATTCTGAATAAATAATCCTAAGCCAAATTGC > NZ_CP009273/4248927‑4249089 | ccGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCAc > 2:229961/1‑90 (MQ=255)ccGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCAc > 2:140437/1‑90 (MQ=255) cTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGgcgc < 1:93832/90‑1 (MQ=255) aTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTa > 2:470030/1‑90 (MQ=255) gCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTgg > 1:197028/1‑90 (MQ=255) gCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTgg > 1:393350/1‑90 (MQ=255) gCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTgg > 2:431002/1‑90 (MQ=255) gtgGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGc > 2:168230/1‑90 (MQ=255) tAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGAc < 1:470030/90‑1 (MQ=255) aaCCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACg > 2:196043/1‑90 (MQ=255) gTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTa > 1:155520/1‑90 (MQ=255) gTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTa > 2:199804/1‑90 (MQ=255) tCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGgcgc < 1:434346/56‑1 (MQ=255) tCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGgcgc > 2:434346/1‑56 (MQ=255) tGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTAAAAATTc > 1:263463/1‑90 (MQ=255) gTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTAAAAATTCTGaa < 1:426715/90‑1 (MQ=255) tGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTAAAAATTCTGaata > 2:2991/1‑90 (MQ=255) ggcggcTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTAAAAATTCTGAATAAATAATCCTAAGCCaa > 2:448327/1‑90 (MQ=255) ggcggcTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTAAAAATTCTGAATAAATAATCCTAAGCCaa > 2:61298/1‑90 (MQ=255) cTATCTGGCGGCGCCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTAAAAATTCTGAATAAATAATCCTAAGCCAAATTGc < 2:263463/90‑1 (MQ=255) | CCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGGCGCAATGGTACCTGGTTTGCCGCAACGTGACGGTTAAAAATTCTGAATAAATAATCCTAAGCCAAATTGC > NZ_CP009273/4248927‑4249089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |