Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 1,558,439 A→G Y518H (TAT→CAT)  dosP ← oxygen‑sensing cyclic‑di‑GMP phosphodiesterase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092731,558,4390AG100.0% 37.1 / NA 13Y518H (TAT→CAT) dosPoxygen‑sensing cyclic‑di‑GMP phosphodiesterase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (4/9);  total (4/9)

GCGCCTAAAACCAAACGCTCTTTTACCATTTCGTTCATCGCCGGGCTGAAGAACTGCCAGCCGTTACCGCCATTCTTGCGAATATAATCCATTGCATTGTGAGCAGTGGAGAGCAAGTAATCGCGGTTTTTACCCAGGTCGTAGCTGATGCCAATACTCAA  >  NZ_CP009273/1558354‑1558514
                                                                                     |                                                                           
gcgcCTAAAACCAAACGCTCTTTTACCATTTCGTTCATCGCCGGGCTGAAGAACTGCCAGCCGTTACCGCCATTCTTGCGAATATGATcc                                                                         >  1:307946/1‑90 (MQ=255)
  gacaaaacCCAACCCCTTTTTCACCTTTTCGTTCATCGCCGGGCTGAAGACCTGCCAGCCGTTACCGCCATTCTTGCGAATATGATCcat                                                                       <  2:67508/86‑1 (MQ=255)
    cTAAAACCAAACGCTTTTTTCCCATTTCGTTCATCGCCGGGTTGAAGAACTGCCAGCCGTTACCGCCATTCTTGCGAATATGATCcattg                                                                     <  1:262776/90‑1 (MQ=255)
         ccaaaaCCCTTTTTTCCCATTTCTTTCATCGCGGGGCTGAAGAACTGCCAGCCGTTACCGCCATTCTTGCGAATATGATCcattgcattg                                                                <  1:464380/87‑1 (MQ=255)
           cAAACCCTCTTTTACCTTTTCTTTAATCGCGGGGCTGAAAACCGGCCAGCCGTTACCGCCATTCTTGCGAATATGATCCATTGCATtgtg                                                              <  2:455504/90‑1 (MQ=255)
              aCGCTCTTTTACCATTTCGTTCATCGCCGGGCTGAAGAACTGCCAGCCGTTACCGCCATTCTTGCGAATATGATCCATTGCATTGTGAGc                                                           <  1:78934/90‑1 (MQ=255)
                             ttCGTTCATCGCCGGGCTGAAGAACTGCCAGCCGTTACCGCCATTCTTGCGAATATGATCCATTGCATTGTGAGCAGTGGAGAGCAAGTa                                            >  1:297233/1‑90 (MQ=255)
                                                    aCTGCCAGCCGTTACCGCCATTCTTGCGAATATGATCCATTGCATTGTGAGCAGTGGAGAGCAAGTAATCGCGGTTTTTACCCAGGTCGt                     <  1:315910/90‑1 (MQ=255)
                                                     cTGCCAGCCGTTACCGCCATTCTTGCGAATATGATCCATTGCATTGTGAGCAGTGGAGAGCAAGTAATCGCGGTTTTTACCCa                           >  1:468793/1‑83 (MQ=255)
                                                     cTGCCAGCCGTTACCGCCATTCTTGCGAATATGATCCATTGCATTGTGAGCAGTGGAGAGCAAGTAATCGCGGTTTTTACCCa                           <  2:468793/83‑1 (MQ=255)
                                                                     ccATTCTTGCGAATATGATCCATTGCATTGTGAGCAGTGGAGAGCAAGTAATCGCGGTTTTTACCCAGGTCGTAGCTGATGCCAATACTc    <  2:54789/90‑1 (MQ=255)
                                                                      cATTCTTGCGAATATGATCCATTGCATTGTGAGCAGTGGAGAGCAAGTAATCGCGGTTTTTACCCAGGTCGTAGCTGATGCCAATACTCa   >  1:436451/1‑90 (MQ=255)
                                                                       aTTCTTGCGAATATGATCCATTGCATTGTGAGCAGTGGAGAGCAAGTAATCGCGGTTTTTACCCAGGTCGTAGCTGATGCCAATACTCaa  <  1:188886/90‑1 (MQ=255)
                                                                                     |                                                                           
GCGCCTAAAACCAAACGCTCTTTTACCATTTCGTTCATCGCCGGGCTGAAGAACTGCCAGCCGTTACCGCCATTCTTGCGAATATAATCCATTGCATTGTGAGCAGTGGAGAGCAAGTAATCGCGGTTTTTACCCAGGTCGTAGCTGATGCCAATACTCAA  >  NZ_CP009273/1558354‑1558514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑