Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 579,943 | (T)8→7 | intergenic (+57/+193) | appY → / ← ompT | DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 579,936 | 0 | T | . | 100.0% | 32.8 / NA | 9 | intergenic (+50/+200) | appY/ompT | DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (5/4); total (5/4) |
TGGAATAAACAAAACAATTGACTGATAATGTTTATTACAAGTTGTCTACATGTTAATTATAATATTATACAGCGTTTTTTTTGATGTGATATTCTGGAACCATTAATTTGTAATTGGGTTGCTGTCGCCTATTTTATAC > NZ_CP009273/579862‑580000 | tGGAATAAACAAAACAATTGACTGATAATGTTTATTACAAGTTGTCTACATGTTAATTATAATATTATACAGCG‑TTTTTTTGATGTGata > 2:121624/1‑90 (MQ=255) aaacaaaacaATTGACTGATAATGTTTATTACAAGTTGTCTACATGTTAATTATAATATTATACAGCG‑TTTTTTTGATGTGATATTCTgg > 2:26699/1‑90 (MQ=255) aaacaaTTGACTGATAATGGTTATTACAAGTTGTCTACATGTTAATTATAATATTATAAAGCG‑TTTTTTTGATGTGATATTCTGGAACCa > 1:111663/1‑90 (MQ=255) gATAATGTTTATTACAAGTTGTCTACATGTTAATTATAATATTATACAGCG‑TTTTTTTGATGTGATATTCTGGAACCATTAATTTGTAAt > 1:44945/1‑90 (MQ=255) ttattaCAAGTTGTCTACATGTTAATTATAATATTATACAGCG‑TTTTTTTGATGTGATATTCTGGAACCATTAATTTGTAATTGGGTTGc > 2:238262/1‑90 (MQ=255) aaGTTGTCTACATGTTAATTATAATATTATACAGCG‑TTTTTTTGATGTGATATTCTGGAACCATTAATTTGTAATTGGGTTGCTGTCGcc < 1:26699/90‑1 (MQ=255) aaGTTGTCTACATGTTAATTATAATATTATACAGCG‑TTTTTTTGATGTGATATTCTGGAACCATTAATTTGTAATTGGGTTGCTGTCGcc < 1:76624/90‑1 (MQ=255) tcATGTTAATTATAATATTATACAGCG‑TTTTTTTGATGTGATATTCTGGAACCATTAATTTGTAATTGGGTTGCTGTCGCCTATTTtata < 1:146726/89‑1 (MQ=255) cATGTTAATTATAATATTATACAGCG‑TTTTTTTGATGTGATATTCTGGAACCATTAATTTGTAATTGGGTTGCTGTCGCCTATTTTatac < 1:238262/90‑1 (MQ=255) | TGGAATAAACAAAACAATTGACTGATAATGTTTATTACAAGTTGTCTACATGTTAATTATAATATTATACAGCGTTTTTTTTGATGTGATATTCTGGAACCATTAATTTGTAATTGGGTTGCTGTCGCCTATTTTATAC > NZ_CP009273/579862‑580000 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |