Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 1,276,251 | Δ1 bp | coding (932/3744 nt) | narG → | nitrate reductase subunit alpha |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,276,249 | 0 | G | . | 100.0% | 24.3 / NA | 7 | coding (930/3744 nt) | narG | nitrate reductase subunit alpha |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (1/6); total (1/6) |
CACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTGGCGATGGGCCACGTAATGCTGCGTGAATTCCACCTCGACAACCCAAGCCAGTATTTCACCGACTATGTGCGTCGCTACACCGAC > NZ_CP009273/1276162‑1276327 | cacaCCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTGGCGATggc < 2:135542/90‑2 (MQ=255) aaaCTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTGGCGAT‑GGCCACGTAATGCTGCGTGAATTCCAcc < 2:133215/90‑1 (MQ=255) aTCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTGGCGAT‑GGCCACGTAATGCTGCGTGAATTCCACCTCGACAAccc < 1:115700/90‑1 (MQ=255) cTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTGGCGAT‑GGCCACGTAATGCTGCGTGAATTCCACCTCGACAACCCaa > 1:107308/1‑90 (MQ=255) aaaCAGGGCACCGATGCGGCAATGGCGCTGGCGAT‑GGCCCCGTAATGCTGCGTGAATTCCACCTCGACAACCCAAGCCAGTATTTCACCg < 1:268504/90‑1 (MQ=255) gCACCGATGCGGCAATGGCGCTGGCGAT‑GGCCACGTAATGCTGCGTGAATTCCACCTCGACAACCCAAGCCAGTATTTCACCGACTAtgt < 2:107308/90‑1 (MQ=255) aCCGATGCGGCAATGGCGCTGGCGAT‑GGCCACGTAATGCTGCGTGAATTCCCCCTCGACAACCCAAGCCAGTATTTCACCGACTATGTGc < 2:276411/90‑1 (MQ=255) ggCGCTGGCGAT‑GGCCACGTAATGCTGCGTGAATTCCCCCTCGACAACCCAAGCCAGTATTTCACCGACTATGTGCGTCGCTACACCGAc < 1:149934/90‑1 (MQ=255) | CACACCAGACTACGCTGAAATCGCCAAACTGTGCGATCTGTGGCTGGCACCGAAACAGGGCACCGATGCGGCAATGGCGCTGGCGATGGGCCACGTAATGCTGCGTGAATTCCACCTCGACAACCCAAGCCAGTATTTCACCGACTATGTGCGTCGCTACACCGAC > NZ_CP009273/1276162‑1276327 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |