| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 115,628 | A→C | T137P (ACG→CCG) | ampD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 115,628 | 0 | A | C | 100.0% | 37.5 / NA | 15 | T137P (ACG→CCG) | ampD | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (7/8); total (7/8) | |||||||||||
TCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTACGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAA > NZ_CP009273/115553‑115705 | tCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACtgatt < 1:191145/90‑1 (MQ=255) tGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGattgattg < 1:171623/90‑1 (MQ=255) gAAGGCCCCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATc < 1:65785/90‑1 (MQ=255) cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc < 2:153643/90‑1 (MQ=255) tataCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAt < 1:105277/90‑1 (MQ=255) ataCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCcgc < 1:202657/39‑1 (MQ=39) ataCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCcgc > 2:202657/1‑39 (MQ=255) gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGGTTGATTTCTATCCGGGTATCGCTAAAAACATGACGGGCCATtgtggt > 1:271842/1‑88 (MQ=255) gATGCGCAGTATCAACAGCTTGCGGCGGTTCCCCGGGGACCGATTGATTGCTATCCCGGTATCGCGAAAAAAATGACGGGCCATtgtggt > 1:217945/1‑88 (MQ=255) gATGCGCAGTATCAACAGCTTGCGGCGGTTCCCCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGat > 1:287010/1‑90 (MQ=255) tGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGatat < 1:311467/90‑1 (MQ=255) gcAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTTCTATCCCGATATCGCTAAAAAAATGACGGGCCATTGTGATAtttc > 1:301909/1‑88 (MQ=255) aGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGa < 2:271842/90‑1 (MQ=255) cTTGCGGCGGTTCCGCGGGCACTGATTGATTTCTATCCGGATATCGCTAAAAACATGACGGGGCATTGTGATATTGCGCCGGATCGGaaa > 2:304876/1‑90 (MQ=255) cTTGCGGCGGGTCCGCGGGGACTGATTTATTGCTTTCCCGATATCGCTAAAAAAAAGAAGGGGCCTTGTGGTATTTGGCCCGGTCGGgaa > 1:252948/1‑90 (MQ=255) | TCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTACGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAA > NZ_CP009273/115553‑115705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |