BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 173573	NA (NA)	185 (0.310) +TACG	49/192	22.5	78.1%	noncoding (70/85 nt)	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	4294404 =	54 (0.090)	185 (0.310) +TACG	49/192	22.5	78.1%	noncoding (547/600 nt)	RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites	RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 577 total aligned reads displayed.

GGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGA  >  NC_000913/173473‑173673

ggACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGtt                                                                                                      >  1:9936082/1‑101 (MQ=255)

 gACGGATAAAGCGTTTACGCGACAACGGATGCCCTATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTACGTCGGATAAGGCGTTc                                                                                                     >  1:1605599/1‑101 (MQ=255)

 gACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTc                                                                                                     <  2:4301310/101‑1 (MQ=255)

  aCGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCa                                                                                                    >  1:8714663/1‑101 (MQ=255)

      aTAAAGCGTTTACGCGACCACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAACCGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgcc                                                                                                <  1:13787428/101‑1 (MQ=255)

      aTAAAGCGTTTACGCGACAACGGATGCCCGATGCGCCGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgcc                                                                                                <  1:12001314/101‑1 (MQ=255)

      aTAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgcc                                                                                                <  1:7626463/101‑1 (MQ=255)

      aTAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgcc                                                                                                <  1:2726115/101‑1 (MQ=255)

      aTAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgcc                                                                                                >  2:1668999/1‑101 (MQ=255)

      aTAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgcc                                                                                                <  2:4499604/101‑1 (MQ=255)

       tAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgccg                                                                                               <  1:4002397/101‑1 (MQ=255)

         nnncGTTTACGCGACAACGGAAGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCa                                                                                             <  2:14216637/98‑1 (MQ=255)

          ngCGTTTGCGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCAt                                                                                            <  2:3803903/100‑1 (MQ=255)

          aGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCAt                                                                                            <  1:64990/101‑1 (MQ=255)

           gCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgccgcnnn                                                                                           >  2:7659447/1‑98 (MQ=255)

             gTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTTCAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCg                                                                                         <  1:4788842/101‑1 (MQ=255)

             gTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCg                                                                                         >  1:2061239/1‑101 (MQ=255)

                 aCGTGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACaa                                                                                     >  1:12944588/1‑101 (MQ=255)

                      gcaccGGATGCCAGATGCGCCGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCAt                                                                                <  2:3172416/97‑1 (MQ=255)

                      aCAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAAcnnn                                                                                >  2:13296535/1‑98 (MQ=255)

                      aCAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCAt                                                                                >  1:1120823/1‑101 (MQ=255)

                       cAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATg                                                                               >  2:4003867/1‑101 (MQ=255)

                       cAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATg                                                                               >  2:2472206/1‑101 (MQ=255)

                        aaCGGATGCCCGATGGGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGc                                                                              >  1:13394665/1‑101 (MQ=255)

                         aCGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCt                                                                             >  1:7049841/1‑101 (MQ=255)

                          cGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTg                                                                            <  1:5849296/101‑1 (MQ=255)

                          cGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCATTCACGCCGTCTCCGACAAACCATgnnn                                                                            >  2:10493086/1‑98 (MQ=25)

                           ggATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGcnnn                                                                           >  2:8643094/1‑98 (MQ=255)

                             acgCCCGATGCGACGCTGGCGCGTCTGATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAt                                                                         <  1:602061/99‑1 (MQ=255)

                             aTGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTgnnn                                                                         >  2:7287384/1‑98 (MQ=255)

                             aTGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTgnnn                                                                         >  2:9369312/1‑98 (MQ=255)

                              tGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATc                                                                        <  1:7973934/101‑1 (MQ=255)

                                  cgctGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACaa                                                                    <  2:6371129/98‑1 (MQ=255)

                                       cGACGCTGGCGCGTCTTATCGGGCCTACACACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCg                                                               <  1:14246807/101‑1 (MQ=255)

                                       cGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGTTCGGATGAGGCGTTCACGCCGCATCCGACAAAACGTCGTGGATCAGAAGtttg                                                               >  2:5217298/1‑99 (MQ=21)

                                        ggcGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACttnnn                                                              >  2:8005801/3‑98 (MQ=255)

                                        gACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACttnnn                                                              >  2:8930435/1‑98 (MQ=255)

                                         aCGCTGGCGCGTCTTATCGGGCCTACAGACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCa                                                             >  1:13090154/1‑101 (MQ=255)

                                         aCGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCa                                                             >  1:10160873/1‑101 (MQ=255)

                                          cGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCaa                                                            >  1:8214162/1‑101 (MQ=255)

                                           gCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGcnnn                                                           >  2:14403251/1‑98 (MQ=255)

                                           gCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCaaa                                                           >  1:10687461/1‑101 (MQ=255)

                                            cTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAac                                                          <  2:6777266/101‑1 (MQ=255)

                                              nnngcgTCTTATCGGGCCTACAAACGGCACCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAacac                                                        <  2:12944588/98‑1 (MQ=255)

                                              ggCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAacac                                                        <  2:6096966/101‑1 (MQ=255)

                                                 gcgTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAACCATGCTGGATCACAACTTCGCAAACACCCg                                                     >  1:3664139/1‑101 (MQ=255)

                                                 gcgTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCg                                                     >  1:6833730/1‑101 (MQ=255)

                                                 gcgTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCg                                                     <  1:9115878/101‑1 (MQ=255)

                                                 gcgTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCg                                                     <  1:4595889/101‑1 (MQ=255)

                                                   gTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGAc                                                   <  2:463387/101‑1 (MQ=255)

                                                   gTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGAc                                                   <  1:9704027/101‑1 (MQ=255)

                                                    tCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACg                                                  >  2:6525660/1‑101 (MQ=255)

                                                    tCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACg                                                  >  2:4391225/1‑101 (MQ=255)

                                                    nnntATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACg                                                  <  2:9669575/98‑1 (MQ=255)

                                                     tttctCGGGCCTCCAACCGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGt                                                 <  2:4824164/97‑1 (MQ=255)

                                                     nnnaTCGGGCCTACAAACGGCCCAGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCACACACCCGACGt                                                 <  2:14820078/98‑1 (MQ=255)

                                                      ttATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTg                                                <  2:2901425/101‑1 (MQ=255)

                                                        aTCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgca                                              <  1:2509834/101‑1 (MQ=255)

                                                          cGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgcagc                                            <  1:5514942/101‑1 (MQ=255)

                                                           gggCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgcagca                                           >  1:10115299/1‑101 (MQ=255)

                                                             gCCTCCAAACGGCCCTGAATCGTAGGTCGGATATGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATc                                         <  2:3362239/101‑1 (MQ=255)

                                                             gCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATc                                         >  2:3586173/1‑101 (MQ=255)

                                                             gCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATc                                         <  1:9981349/101‑1 (MQ=255)

                                                              cttACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgcagcannn                                        >  2:10950052/3‑98 (MQ=255)

                                                              ccTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCATACACCCGACGTGCAGCATCg                                        >  1:8954037/1‑101 (MQ=255)

                                                              ccTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCg                                        >  1:734813/1‑101 (MQ=255)

                                                                 ataaaCGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATg                                     >  2:544377/3‑101 (MQ=255)

                                                                 aCAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATg                                     <  1:1046651/101‑1 (MQ=255)

                                                                     aCGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATggnnn                                 >  2:14648769/1‑98 (MQ=255)

                                                                      cGGCCCCGACTCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACCCCCGACGTGCAGCATCGATGGTGtt                                <  2:703925/101‑1 (MQ=255)

                                                                       ggCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTa                               <  2:5909292/101‑1 (MQ=255)

                                                                        gCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGgtgtnnn                              >  2:11484676/1‑98 (MQ=255)

                                                                           nnnaaTCGTAGGTCGGATAAGGCGTTCACGCCGCATCAGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGa                           <  2:12659364/98‑1 (MQ=255)

                                                                             gAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGata                         >  1:3091878/1‑101 (MQ=255)

                                                                             gAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGata                         >  1:4103405/1‑101 (MQ=255)

                                                                                tCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCt                      <  2:6889228/101‑1 (MQ=255)

                                                                                atgTAGGGCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGatannn                      >  2:13774676/3‑98 (MQ=255)

                                                                                 nnngggTCGGATACTCCTTTCACGCCGCATCCTACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCtt                     <  2:9845908/97‑1 (MQ=255)

                                                                                 cGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCtt                     >  1:14798658/1‑101 (MQ=255)

                                                                                 cGTAGGGCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCtt                     >  2:414675/1‑101 (MQ=255)

                                                                                   ttggTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGAGCAGCATCGATGGGGTTATTGATATCtnnn                   >  2:12111647/3‑98 (MQ=38)

                                                                                   tAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTcc                   >  2:2141946/1‑101 (MQ=255)

                                                                                     ggTCGGATAAGGCGTACACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCAt                 <  1:11036293/101‑1 (MQ=255)

                                                                                        cGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCt              <  1:941871/101‑1 (MQ=255)

                                                                                           aTAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCtnnn           >  2:8251336/1‑98 (MQ=255)

                                                                                            tAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTgc          <  1:5186877/101‑1 (MQ=255)

                                                                                             aaGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTgcg         <  1:4363442/101‑1 (MQ=255)

                                                                                             aaGGCGTTCACGCCGCATCCGACAAACCACGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTgcc         >  1:12278692/1‑100 (MQ=255)

                                                                                              aGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTgcgc        >  1:14589713/1‑101 (MQ=255)

                                                                                               nnngTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGcc       <  2:11803012/98‑1 (MQ=255)

                                                                                               ggCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGcc       >  1:3430691/1‑101 (MQ=255)

                                                                                               ggCGTCCCCGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGcc       <  1:193165/101‑1 (MQ=255)

                                                                                                nnnttCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCa      <  2:13975054/98‑1 (MQ=255)

                                                                                                gCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCa      >  1:13964795/1‑101 (MQ=255)

                                                                                                  gTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGccnnn    >  2:10703636/1‑98 (MQ=255)

                                                                                                  gTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACg    >  1:11653622/1‑101 (MQ=255)

                                                                                                  gTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACg    >  1:11427166/1‑101 (MQ=255)

                                                                                                  gTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACg    >  1:12644214/1‑101 (MQ=255)

                                                                                                  gTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGGGTTATTGATATCTTCCATGCTGTGCGCCACg    >  2:1363511/1‑101 (MQ=255)

                                                                                                    tCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCAcnnn  >  2:11187593/1‑98 (MQ=255)

GGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGA  >  NC_000913/173473‑173673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.