BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,092,014	3461 bp→GCATGCGGATCCTCTAGAGTCGACATATG		[rhaD]–rhaB	[rhaD], rhaA, rhaB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4092014	4095474	3461	620 [0]	[0] 628	[rhaD]–rhaB	[rhaD],rhaA,rhaB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4092013	0 (0.000)	421 (0.970) +GCATGCGGATCCTCTAGAGTCGACATATG	123/142	0.4	100%	coding (283/825 nt)	rhaD	rhamnulose‑1‑phosphate aldolase
*	?	NC_000913	4095475 =	0 (0.000)	421 (0.970) +GCATGCGGATCCTCTAGAGTCGACATATG	123/142	0.4	100%	intergenic (‑4/‑284)	rhaB/rhaS	rhamnulokinase/DNA‑binding transcriptional activator for rhaBAD and rhaT, L‑rhamnose‑binding

Only 100 of 628 total aligned reads displayed.

CAGCGTCAGGCTGCGGCATTCACGCTCGTAACGCGCCAGCATCACGCGCCCACTGGATGCGCCGAGATCGACGGCGACACAATTGCGAAAGGTCATAATGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGAAAGA  >  NC_000913/4095376‑4095575

nnncggaagtggggccggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgga                                                                                                     <  2:11701226‑M2/2‑2 (MQ=255)

   cggaagtggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGAt                                                                                                  <  1:4640791‑M2/5‑1 (MQ=255)

   cggaagtggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagaggcgacatatggtnnn                                                                                                  >  2:8860050‑M2/97‑98 (MQ=255)

    ggaagtggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatggtgnnn                                                                                                 >  2:9304045‑M2/96‑98 (MQ=255)

      nnntggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCct                                                                                               <  2:11247461‑M2/8‑1 (MQ=255)

       nnnggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCctg                                                                                              <  2:7869951‑M2/9‑1 (MQ=255)

       agtggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCctg                                                                                              <  1:1843246‑M2/9‑1 (MQ=255)

       agtggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCctg                                                                                              <  1:1537043‑M2/9‑1 (MQ=255)

        gtggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTgatccnnn                                                                                             >  2:8259745‑M2/92‑98 (MQ=255)

        gtggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCctgc                                                                                             >  2:133862‑M2/92‑101 (MQ=255)

         tggggacggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCctgct                                                                                            <  2:5205147‑M2/11‑1 (MQ=255)

               cggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAAttt                                                                                      <  2:4438172‑M2/17‑1 (MQ=255)

                ggcttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTc                                                                                     <  2:6179924‑M2/18‑1 (MQ=255)

                ggcttcgttggttaacccccaaagaatggggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTc                                                                                     >  2:2260451‑M2/84‑101 (MQ=255)

                  nnncgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCAt                                                                                   <  2:11886308‑M2/20‑1 (MQ=255)

                   ttcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCAtt                                                                                  >  1:8952331‑M2/81‑101 (MQ=255)

                    tcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTa                                                                                 <  1:7448957‑M2/22‑1 (MQ=255)

                    tcgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTa                                                                                 >  1:11180320‑M2/80‑101 (MQ=255)

                     tgttggttagccccccaagaatgtggtagcccgcgacgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTAc                                                                                <  2:5774070‑M2/23‑1 (MQ=255)

                     cgttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTAc                                                                                <  1:13843213‑M2/23‑1 (MQ=255)

                       ttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGa                                                                              <  1:4218619‑M2/25‑1 (MQ=255)

                       ttggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcgaatcctctagagtcgacatatgGGGATCCTGCTGAATTTCATTAcgc                                                                              >  1:1953593‑M2/77‑100 (MQ=255)

                       ttggttaacccccaaagaatgtcgtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGa                                                                              <  1:9395446‑M2/25‑1 (MQ=255)

                        ttgttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGAc                                                                             >  1:3201470‑M2/76‑101 (MQ=255)

                          gttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCa                                                                           >  1:2338820‑M2/74‑101 (MQ=255)

                           ttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAg                                                                          >  1:1000341‑M2/73‑101 (MQ=255)

                           ttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAg                                                                          >  1:8283423‑M2/73‑101 (MQ=255)

                            taacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGt                                                                         <  1:11537895‑M2/30‑1 (MQ=255)

                              acccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGCCCAGTCt                                                                       <  1:6706737‑M2/32‑1 (MQ=255)

                              acccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCt                                                                       <  2:2441373‑M2/32‑1 (MQ=255)

                                     aagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAgc                                                                <  1:12292971‑M2/39‑1 (MQ=255)

                                      nnnatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAgcg                                                               <  2:9047781‑M2/40‑1 (MQ=255)

                                       gaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTctaaga                                                                   <  2:10912857‑M2/36‑3 (MQ=255)

                                       gaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAgcgc                                                              <  1:2676578‑M2/41‑1 (MQ=255)

                                        aatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGcc                                                             <  1:9701463‑M2/42‑1 (MQ=255)

                                           gtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGa                                                          >  1:6915325‑M2/57‑101 (MQ=255)

                                           gtgggagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAgcgccnnn                                                          >  2:14386841‑M2/57‑98 (MQ=255)

                                                agcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTcg                                                     >  1:4889386‑M2/52‑101 (MQ=255)

                                                  cccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAattcnnn                                                   >  2:14713693‑M2/50‑98 (MQ=255)

                                                  cccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTcgcg                                                   <  2:2003494‑M2/52‑1 (MQ=255)

                                                   ccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGa                                                  >  1:2978183‑M2/49‑101 (MQ=255)

                                                     gcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGAcc                                                >  1:11744202‑M2/47‑101 (MQ=255)

                                                     gcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGGGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGAcc                                                >  1:9285249‑M2/47‑101 (MQ=255)

                                                      nnncgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGTTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCt                                               <  2:12471028‑M2/56‑1 (MQ=255)

                                                        ccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGcgaccnnn                                             >  2:10005759‑M2/44‑98 (MQ=255)

                                                          gtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTtctc                                           <  2:1671095‑M2/60‑1 (MQ=255)

                                                          gtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTtctc                                           <  2:284496‑M2/60‑1 (MQ=255)

                                                          gtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTtctc                                           <  2:3547654‑M2/60‑1 (MQ=255)

                                                          gtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTtctc                                           >  2:4660562‑M2/42‑101 (MQ=255)

                                                            cgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGt                                         <  1:5445275‑M2/62‑1 (MQ=255)

                                                             gctgtcgacgcatgctgatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGtt                                        <  1:13562506‑M2/63‑1 (MQ=255)

                                                             gctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGAccttctcnnn                                        >  2:8482353‑M2/39‑98 (MQ=255)

                                                              ctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTa                                       >  1:3382940‑M2/38‑101 (MQ=255)

                                                               tgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCtcgtnnn                                      >  2:9802428‑M2/37‑98 (MQ=255)

                                                               tgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCtcgtnnn                                      >  2:13206538‑M2/37‑98 (MQ=255)

                                                               tgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTAc                                      >  1:14323456‑M2/37‑101 (MQ=255)

                                                               tgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTAc                                      >  2:5398941‑M2/37‑101 (MQ=255)

                                                               tgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGATGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTAc                                      >  1:10727834‑M2/37‑101 (MQ=255)

                                                                gtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACt                                     <  2:1426133‑M2/66‑1 (MQ=255)

                                                                gtcgacgcatgcgcatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACt                                     <  1:7760270‑M2/66‑1 (MQ=255)

                                                                  cgacgcatgcggctcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGa                                   <  2:6456216‑M2/68‑1 (MQ=255)

                                                                  cgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGa                                   >  2:6805934‑M2/34‑101 (MQ=255)

                                                                   gacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTtactnnn                                  >  2:7376593‑M2/33‑98 (MQ=255)

                                                                   gacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGAc                                  <  2:7062145‑M2/69‑1 (MQ=255)

                                                                   gacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGAc                                  <  2:2132409‑M2/69‑1 (MQ=255)

                                                                   gacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGAc                                  <  1:6452278‑M2/69‑1 (MQ=255)

                                                                   gacgcatgcggatccgctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGAc                                  >  1:13401201‑M2/33‑101 (MQ=255)

                                                                    acgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACa                                 <  1:12532460‑M2/70‑1 (MQ=255)

                                                                       catgcggatcctctagagtcgacatatgGTGATCCTGCTGAGTTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGTCCTTCTCGGTAGTgacannn                              >  2:13652972‑M2/29‑98 (MQ=255)

                                                                       catgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTGTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGa                              >  1:8027782‑M2/29‑101 (MQ=255)

                                                                        atgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGaa                             >  2:334169‑M2/28‑101 (MQ=255)

                                                                         tccggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTATAAAGCTCCTGAATTCGCGACCTTCTCGTTACTGacaggnnn                            >  2:10558904‑M2/27‑98 (MQ=255)

                                                                           cggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAAt                          <  2:1488738‑M2/77‑1 (MQ=255)

                                                                            nnntcctctagagtcgacatatgGTGATACTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATg                         <  2:12730022‑M2/78‑1 (MQ=255)

                                                                             gatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATgg                        <  2:424699‑M2/79‑1 (MQ=255)

                                                                              atcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAaaatnnn                       >  2:9494349‑M2/22‑98 (MQ=255)

                                                                              atcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAaaatnnn                       >  2:8051561‑M2/22‑98 (MQ=255)

                                                                              atcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATggg                       >  1:7158879‑M2/22‑101 (MQ=255)

                                                                                cctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGcc                     >  2:2989125‑M2/20‑101 (MQ=255)

                                                                                  tctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCAt                   >  2:2632313‑M2/18‑101 (MQ=255)

                                                                                  nnnagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGggccct                   <  2:7793957‑M2/84‑3 (MQ=255)

                                                                                    tagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTg                 >  1:10240257‑M2/16‑101 (MQ=255)

                                                                                    tagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTg                 <  1:1054564‑M2/86‑1 (MQ=255)

                                                                                    tagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTg                 >  1:12111619‑M2/16‑101 (MQ=255)

                                                                                     nnngtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTgg                <  2:12891079‑M2/87‑1 (MQ=255)

                                                                                       agtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCa              <  1:4482594‑M2/89‑1 (MQ=255)

                                                                                       agtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCa              <  1:4026099‑M2/89‑1 (MQ=255)

                                                                                        gtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCaa             >  1:12764357‑M2/12‑101 (MQ=255)

                                                                                          nnncatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAAcc           <  2:12192880‑M2/92‑1 (MQ=255)

                                                                                           nnnatatgGTGATCCTGCTGAATTTCATTACCACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCa          <  2:13962488‑M2/93‑1 (MQ=255)

                                                                                            acatatgGTGGTCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGACTTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAg         <  1:13113699‑M2/94‑1 (MQ=255)

                                                                                            acatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAg         >  1:6313089‑M2/8‑101 (MQ=255)

                                                                                            acatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAg         <  1:12998209‑M2/94‑1 (MQ=255)

                                                                                                atgGTGATCCTGCTGAATTTCATTACGCCCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGaa     <  1:11918653‑M2/98‑1 (MQ=255)

                                                                                                atgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCGATGTGCAACCAGGGaa     >  2:388518‑M2/4‑101 (MQ=255)

                                                                                                atgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGaa     >  1:1039281‑M2/4‑101 (MQ=255)

                                                                                                   gtgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGaannn  >  2:10210868/1‑98 (MQ=255)

                                                                                                   gtgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGaannn  >  2:8722254/1‑98 (MQ=255)

                                                                                                   gtgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGAAAGa  <  1:5213801/101‑1 (MQ=255)

                                                                                                   gtgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGAAAGa  <  1:8802578/101‑1 (MQ=255)

CAGCGTCAGGCTGCGGCATTCACGCTCGTAACGCGCCAGCATCACGCGCCCACTGGATGCGCCGAGATCGACGGCGACACAATTGCGAAAGGTCATAATGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAATGGGCCATTGGCAACCAGGGAAAGA  >  NC_000913/4095376‑4095575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`