Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913580,5180TC49.6% 383.1 / inf 363D154D (GAT→GAC) nohDDLP12 prophage; DNA packaging protein
Reads supporting (aligned to +/- strand):  ref base T (88/95);  new base C (89/91);  total (177/186)
Fisher's exact test for biased strand distribution p-value = 8.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.99e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 387 total aligned reads displayed.

AGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTT  >  NC_000913/580435‑580618
                                                                                   |                                                                                                    
aggaTTCTCGACAGGATCCCCCTGTCGGTGCAGGGGCATTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGaa                                                                                     <  1:3448462/98‑1 (MQ=1)
                ttcctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTg                                                                     <  1:974604/96‑1 (MQ=0)
                gtcctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTg                                                                     <  1:11897103/96‑1 (MQ=0)
                  cctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGa                                                                   <  1:2445343/98‑1 (MQ=0)
                  cctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGa                                                                   >  2:6090144/4‑101 (MQ=0)
                                      cttcccGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGc                                               >  1:9914193/5‑101 (MQ=0)
                                       ttcccGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCt                                              <  1:11778593/98‑1 (MQ=1)
                                       ttcccGGAGCTGGAAAACCGACATATTGATTTCATCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCt                                              <  2:3122214/98‑1 (MQ=0)
                                                   nnnaaCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAatatat                                  <  2:14418297/98‑1 (MQ=11)
                                                   gAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAatatat                                  >  1:6728672/1‑101 (MQ=11)
                                                    aaaaCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATc                                 <  2:5475083/101‑1 (MQ=31)
                                                    aaaaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATc                                 <  1:2703871/101‑1 (MQ=11)
                                                     nnnccGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCg                                <  2:8431523/98‑1 (MQ=11)
                                                     aaaCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCg                                <  1:9243754/101‑1 (MQ=32)
                                                     aaaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCg                                <  1:10068588/101‑1 (MQ=11)
                                                     aaaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCg                                <  1:13376500/101‑1 (MQ=11)
                                                      aaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGTTGAAATAATACCGGGGTTGCTGAGTGAATATATCGa                               >  1:3368707/1‑101 (MQ=11)
                                                       aCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGaa                              >  1:5586525/1‑101 (MQ=35)
                                                        nnnaCATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAAc                             <  2:7334232/98‑1 (MQ=11)
                                                         nnncATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACa                            <  2:12681847/98‑1 (MQ=38)
                                                         cGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACa                            >  2:297457/1‑101 (MQ=38)
                                                         cGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACa                            >  1:1244784/1‑101 (MQ=38)
                                                         cGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACa                            <  1:8108679/101‑1 (MQ=11)
                                                         cGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCGGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACa                            >  1:3691924/1‑101 (MQ=11)
                                                          gACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAg                           <  1:10275343/101‑1 (MQ=14)
                                                          gACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAg                           >  1:1732193/1‑101 (MQ=14)
                                                           nnntattGATTTCCTCAAGAAGGCCATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGt                          <  2:13795528/96‑1 (MQ=14)
                                                           gcATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGt                          <  2:5743167/100‑1 (MQ=14)
                                                           aCATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAgc                          >  1:5833639/1‑100 (MQ=14)
                                                           aCATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGt                          >  1:1255696/1‑101 (MQ=14)
                                                            cATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCGGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTc                         >  1:7001120/1‑101 (MQ=255)
                                                            cATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTc                         >  1:13909430/1‑101 (MQ=40)
                                                            cATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACannn                         >  2:10142447/1‑98 (MQ=2)
                                                             aTGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCa                        >  2:508321/1‑101 (MQ=255)
                                                             aTGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGGGAATATATCGAACAGTcg                        >  1:14696985/1‑100 (MQ=255)
                                                              tattGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAg                       <  2:2433323/99‑1 (MQ=14)
                                                              tattGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAg                       <  2:6437919/99‑1 (MQ=14)
                                                              tattGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAg                       <  2:4301774/99‑1 (MQ=14)
                                                              tattGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAg                       <  1:1819050/99‑1 (MQ=14)
                                                               gatGATTTCCTCAAACGGTATATCAACAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                      <  2:872337/99‑1 (MQ=14)
                                                               gTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                      <  1:6277127/101‑1 (MQ=255)
                                                               gTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                      <  1:5451696/101‑1 (MQ=255)
                                                               attGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgt                      >  2:3342580/2‑100 (MQ=14)
                                                               attGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                      <  2:6366051/100‑1 (MQ=14)
                                                               attGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                      <  1:10495050/100‑1 (MQ=14)
                                                               attGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                      <  1:10969857/100‑1 (MQ=14)
                                                               attGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                      <  1:4504266/100‑1 (MQ=14)
                                                                 tGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCACCGGCGCTGGATGAACTGATACGGGGGTGGCTGAGTGAATATATCGAAGAGTCAgnnn                    >  2:9096113/1‑98 (MQ=14)
                                                                 tGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgnnn                    >  2:13594439/1‑98 (MQ=14)
                                                                 tGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgggt                    >  2:1996240/1‑99 (MQ=14)
                                                                 tGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGtt                    <  2:4656229/101‑1 (MQ=14)
                                                                  gATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAggnnn                   >  2:12085215/1‑98 (MQ=14)
                                                                  gATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTa                   <  1:14055473/101‑1 (MQ=17)
                                                                  gATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTa                   >  1:5003194/1‑101 (MQ=17)
                                                                  gATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTa                   >  1:7549804/1‑101 (MQ=17)
                                                                   aTTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTaa                  >  1:12663679/1‑101 (MQ=255)
                                                                   aTTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGtnnn                  >  2:14848106/1‑98 (MQ=14)
                                                                    tttCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAc                 >  2:953008/1‑101 (MQ=255)
                                                                    tttCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAc                 >  2:3699357/1‑101 (MQ=255)
                                                                    tttCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAc                 <  1:8516342/101‑1 (MQ=255)
                                                                    nnnccTGAAACGGGATATCATCAAAGCCCTGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAc                 <  2:10657069/98‑1 (MQ=255)
                                                                      tCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCTCTAGATGAACTCATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAg               <  1:13231470/101‑1 (MQ=255)
                                                                      tCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTACTGAGTGAATATATCGAACAGTCAGGTTAACAg               <  1:14458658/101‑1 (MQ=255)
                                                                      nnntGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAccg               <  2:12433543/98‑3 (MQ=255)
                                                                       ccTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGCGAATATATCGAACAGTCAGGGTAACAgg              >  1:10155597/1‑101 (MQ=255)
                                                                        cTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGc             <  1:8842837/101‑1 (MQ=255)
                                                                        cTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGc             >  1:12863638/1‑101 (MQ=255)
                                                                        cTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGc             <  1:5660218/101‑1 (MQ=255)
                                                                         tGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAgnnn            >  2:9257447/1‑98 (MQ=255)
                                                                         tGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCt            <  1:13514660/101‑1 (MQ=255)
                                                                         nnnaaCGGGATATCATCAAAGCCATGAACACAGCCGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCt            <  2:7815699/98‑1 (MQ=255)
                                                                          ggaaCGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAggnnn           >  2:10905258/3‑98 (MQ=255)
                                                                          gAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTg           <  1:422233/101‑1 (MQ=255)
                                                                          gAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTg           <  1:13447/101‑1 (MQ=255)
                                                                          gAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTg           <  1:4848505/101‑1 (MQ=255)
                                                                          gAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTg           >  1:9135215/1‑101 (MQ=255)
                                                                           nnncGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGc          <  2:11561535/98‑1 (MQ=255)
                                                                           aagaaggACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAGGGGCTGc          >  1:11461133/6‑101 (MQ=17)
                                                                           aaaCGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGc          <  1:8211750/101‑1 (MQ=255)
                                                                           aaaCGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGc          >  1:732498/1‑101 (MQ=255)
                                                                           aaaCGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGGGAATATATCGAACAGTCAGGTTAACAGGCTGc          >  2:4104079/1‑101 (MQ=255)
                                                                            aaCGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAGTATATCGAACAGTCAGGTTAACAGGCtnnn         >  2:11067904/1‑98 (MQ=255)
                                                                            aaCGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCg         >  1:5120233/1‑101 (MQ=255)
                                                                            aaCGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCg         <  1:2072358/101‑1 (MQ=255)
                                                                             nnngtatatCATCAAAGCCATGAACACAGCCGCCGCGCTGGATGATCTGATTCCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCgg        <  2:14531293/96‑1 (MQ=18)
                                                                             gaaggACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAGGGGCTGcag        <  1:12260805/98‑3 (MQ=17)
                                                                             gaaggACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTGGCTGAGTGAATATATCGAACAGTCGGGTTAAGGGGCTGcag        <  1:3030520/98‑3 (MQ=17)
                                                                              aaggACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGTTTAAGGGGCTGCAGc       >  2:6665047/3‑101 (MQ=17)
                                                                              aaggACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAGGGGCTGcnnn       >  2:13376730/3‑98 (MQ=17)
                                                                              aaggACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAGGGGCTGCAGc       >  1:4366364/3‑101 (MQ=17)
                                                                               gggATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGCTGAACTGATACCGGGGTTGCTGAGTGAATATAACGAACAGTCAGGTTAACAGGCTGCGGCa      <  1:14297960/101‑1 (MQ=255)
                                                                               gggATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCa      >  1:1310759/1‑101 (MQ=255)
                                                                               aggACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAGGGGCTgcagca      <  1:7193501/100‑1 (MQ=17)
                                                                                nnntatCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCAt     <  2:14101742/98‑1 (MQ=255)
                                                                                ggATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCAt     >  1:9444064/1‑101 (MQ=255)
                                                                                ggATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCAt     <  1:13616201/101‑1 (MQ=255)
                                                                                ggACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAGGGGCTGcagnnn     >  2:7584235/1‑96 (MQ=17)
                                                                                 gATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCAtt    <  2:5352606/101‑1 (MQ=255)
                                                                                 gATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCAtt    <  1:10841489/101‑1 (MQ=255)
                                                                                 gATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCAtt    >  1:5947047/1‑101 (MQ=255)
                                                                                   |                                                                                                    
AGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGCATTTT  >  NC_000913/580435‑580618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑