New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1432788292 (1.070)6 (0.030)
+CAGGCTGGCGTTCG		 3/146 37.1 2.6% intergenic (‑540/+194) ynaE/ttcC cold shock protein, function unknown, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related
?NC_000913 = 1630540 240 (0.880)intergenic (‑231/‑556) ydfJ/ydfK pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein/cold shock protein, function unknown, Qin prophage
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1432748‑1432788
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGATAGTGTGAGTATTGAATGATTTCCAG  <  NC_000913/1630540‑1630510
                                         ||||||||||||||                               
agtAAAACCGCCG‑CAAGTCGTATGCAAGAACGTGCGGCGGCAGGCTGGCGTTCGTTCGATAGTGCGAGTATTGAATGATTTC     >  2:7157213/4‑82
 GAAAAACCGCCG‑CAAGTCGTATGCAAGAACGTGCGGCGGCAGGCTGGCGTTCGTTCGATAGTGCGAGTATTGAATGATTTCC    <  2:4562448/82‑1
  tAAAACCGCCG‑CAAGTCGTATGCAAGAACGTGCGGCGGCAGGCTGGCGTTCGTTCGATAGTGCGAGTATTGAATGATTTCCA   <  2:2508957/81‑1
  tAAAACCGCCG‑CAAGTCGTATGCAAGAACGTGCGGCGGCAGGCTGGCGTTCGTTCGATAGTGCGAGTATTGAATGATTTCCA   <  2:4793927/81‑1
  tAAAACCGCCG‑CAAGTCGTATGCAAGAACGTGCGGCGGCAGGCTGGCGTTCGTTCGATAGTGCGAGTATTGAATGATTTCCA   <  2:5301607/81‑1
   AAAACCGCCG‑CAAGTCGTATGCAAGAACGTGCGGCGGCAGGCTGGCGTTCGTTCGATAGTGCGAGTATTGAATGATTTCCAG  >  2:6147433/1‑82
                                         ||||||||||||||                               
TGAAAAACCGCAGTCACGTCGTATGCAAGAACGTGCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1432748‑1432788
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGATAGTGTGAGTATTGAATGATTTCCAG  <  NC_000913/1630540‑1630510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.