BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,957	C→T	intergenic (‑121/+78)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/conserved protein (pseudogene)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,957	0	C	T	100.0%	898.3 / NA	232	intergenic (‑121/+78)	ppiC/yifN	peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/conserved protein (pseudogene)
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (113/119); total (113/119)

Only 100 of 249 total aligned reads displayed.

GGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCCTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT  >  NC_000913/3957864‑3958050

ggcggcGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGcc                                                                                               >  1:1629740/1‑94 (MQ=255)

   ggcgATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATTGCAAAAGCCCGGAAAATCCGGGCTTCg                                                                                            >  1:4052154/1‑94 (MQ=255)

     cgATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCa                                                                                          <  1:1948642/94‑1 (MQ=255)

      gATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCat                                                                                         >  1:78684/1‑93 (MQ=255)

              taTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCa                                                                                 <  1:6886594/93‑1 (MQ=255)

              cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCa                                                                                 <  1:908082/94‑1 (MQ=255)

                 gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAgg                                                                              >  1:709196/1‑94 (MQ=255)

                  aTCCTCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAg                                                                                         <  2:4102291/82‑1 (MQ=255)

                  aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCTCAGGTCCCTCAAggc                                                                             >  1:6147729/1‑93 (MQ=255)

                  aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAg                                                                                         >  2:807359/1‑82 (MQ=255)

                     cGCAGATGCTACCGTAATTGTCGGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTc                                                                                      <  2:3980414/82‑1 (MQ=255)

                       cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGaa                                                                        >  1:7284203/1‑94 (MQ=255)

                        aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGaaa                                                                       >  1:1375464/1‑94 (MQ=255)

                        aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAATCCGGGCTTCGCAGGTCCCt                                                                                   >  2:5027404/1‑82 (MQ=255)

                         gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTc                                                                                  <  2:2523349/82‑1 (MQ=255)

                          ttGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAAc                                                                     <  1:5333820/93‑1 (MQ=255)

                          aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCa                                                                                 <  2:164927/82‑1 (MQ=255)

                            gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGACCGGAAAATCCGGGCTTCGCAGGTCCCTCAAg                                                                               >  2:2383625/1‑82 (MQ=255)

                              tAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACCTaa                                                                 >  1:6687599/1‑93 (MQ=255)

                                aCGTAATTGTCAGTCAGGGAGTGGCTGGTTCATATTTGGCAAAAGCCCGGAAAATGCCGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAgga                                                               >  1:3071588/1‑93 (MQ=255)

                                 cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGgag                                                                          <  2:3604509/82‑1 (MQ=255)

                                  ttAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                                             <  1:6417316/93‑1 (MQ=255)

                                  gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGca                                                             >  1:5060259/1‑93 (MQ=255)

                                  ctAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                                             <  1:7022220/93‑1 (MQ=255)

                                  ctAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                                             <  1:2706642/93‑1 (MQ=255)

                                   tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCACGGGGAGAAAACTTCGGGccc                                                            >  1:1603024/1‑93 (MQ=255)

                                   tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGaa                                                                        <  2:460971/82‑1 (MQ=255)

                                    gaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc                                                           <  1:1677882/93‑1 (MQ=255)

                                    aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGaaa                                                                       <  2:5439667/82‑1 (MQ=255)

                                     aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAACAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctct                                                          <  1:7464332/94‑1 (MQ=255)

                                       tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGTGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt                                                        <  1:5247405/94‑1 (MQ=255)

                                       agtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt                                                        <  1:2193819/93‑1 (MQ=255)

                                        ttcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                                       <  1:109187/93‑1 (MQ=255)

                                        gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACtt                                                                   >  2:484347/1‑82 (MQ=255)

                                        gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACtt                                                                   <  2:6990761/82‑1 (MQ=255)

                                         tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                                  <  2:2882365/82‑1 (MQ=255)

                                         tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                                      <  1:7124703/94‑1 (MQ=255)

                                         tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgc                                                      >  1:2270697/1‑93 (MQ=255)

                                            gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGca                                                   >  1:3447799/1‑93 (MQ=255)

                                               agGTAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAcc                                                >  1:4423230/1‑93 (MQ=255)

                                               agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAcc                                                >  1:3224233/1‑93 (MQ=255)

                                                gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                               >  1:5516595/1‑94 (MQ=255)

                                                  gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                                         >  2:6406906/1‑82 (MQ=255)

                                                  gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                                         <  2:864580/82‑1 (MQ=255)

                                                  aaGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg                                             <  1:5423827/93‑1 (MQ=255)

                                                   aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt                                                        >  2:626471/1‑82 (MQ=255)

                                                   aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt                                            >  1:2443651/1‑94 (MQ=255)

                                                    gTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                                       >  2:532653/1‑82 (MQ=255)

                                                    gTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                                       >  2:2063144/1‑82 (MQ=255)

                                                     tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                                      <  2:7145554/82‑1 (MQ=255)

                                                     tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                                      >  2:1098903/1‑82 (MQ=255)

                                                     aggCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa                                          <  1:3762717/93‑1 (MQ=255)

                                                        cTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                                   <  2:2511416/82‑1 (MQ=255)

                                                           atACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                                    <  1:4565165/93‑1 (MQ=255)

                                                            gaCATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                                   <  1:5922062/93‑1 (MQ=255)

                                                            caCATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                                   <  1:5776920/93‑1 (MQ=255)

                                                             gcATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                  <  1:4656581/93‑1 (MQ=255)

                                                             aCATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                                              <  2:5189859/82‑1 (MQ=255)

                                                              cATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg                                             <  2:5813315/82‑1 (MQ=255)

                                                               atatatGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt                                            <  2:1857571/82‑1 (MQ=255)

                                                               atatatGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggggt                                >  1:6285489/1‑93 (MQ=255)

                                                                tatatGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                                           <  2:7018659/82‑1 (MQ=255)

                                                                 ctatGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg                              <  1:5610577/93‑1 (MQ=255)

                                                                  tatGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                                         <  2:7265864/82‑1 (MQ=255)

                                                                  tatGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                                         <  2:3396421/82‑1 (MQ=255)

                                                                   atGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                                        <  2:634022/82‑1 (MQ=255)

                                                                     tgCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta                          <  1:6161148/93‑1 (MQ=255)

                                                                     ggCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                      >  2:2601382/1‑82 (MQ=255)

                                                                     ggCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                      >  2:4380451/1‑82 (MQ=255)

                                                                      gCAAAAGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                                     <  2:1611512/82‑1 (MQ=255)

                                                                        aaaaGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                                   <  2:1963935/82‑1 (MQ=255)

                                                                         caaGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt                      <  1:3649502/93‑1 (MQ=255)

                                                                          taGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta                     <  1:7177868/93‑1 (MQ=255)

                                                                          aaGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta                     <  1:5478468/94‑1 (MQ=255)

                                                                           tgCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                    <  1:4288355/93‑1 (MQ=255)

                                                                           aGCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                    >  1:1457163/1‑94 (MQ=255)

                                                                            gCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                               <  2:1730348/82‑1 (MQ=255)

                                                                            gCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt                   <  1:5284877/94‑1 (MQ=255)

                                                                            gCCCGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt                   >  1:3314485/1‑94 (MQ=255)

                                                                             cccGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg                              <  2:3311179/82‑1 (MQ=255)

                                                                               cGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa                                                  >  1:5928298/1‑60 (MQ=255)

                                                                               cGGAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt                            <  2:2667266/82‑1 (MQ=255)

                                                                                ggAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt                           >  2:1465918/1‑82 (MQ=255)

                                                                                ggAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTcc               >  1:4515307/1‑93 (MQ=255)

                                                                                 gAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta                          >  2:5620191/1‑82 (MQ=255)

                                                                                 gAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta                          >  2:5504288/1‑82 (MQ=255)

                                                                                 gAAAATCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta                          >  2:3779108/1‑82 (MQ=255)

                                                                                  aaaaTCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat                         >  2:1031087/1‑82 (MQ=255)

                                                                                  aaaaTCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat                         <  2:3038659/82‑1 (MQ=255)

                                                                                   caaTCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAtt            <  1:462928/93‑1 (MQ=255)

                                                                                   aaaTCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAtt            <  1:1568816/94‑1 (MQ=255)

                                                                                   aaaTCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAtg            >  1:487327/1‑93 (MQ=255)

                                                                                     gtCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTa          <  1:2843339/93‑1 (MQ=255)

                                                                                     aTCCGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt                      >  2:1226396/1‑82 (MQ=255)

                                                                                       ccGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                    >  2:6079344/1‑82 (MQ=255)

                                                                                       ccGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                    <  2:1375464/82‑1 (MQ=255)

                                                                                        tgggCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGa       <  1:2011984/93‑1 (MQ=255)

                                                                                        cGGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt                   <  2:2236401/82‑1 (MQ=255)

                                                                                          ggCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAga     >  1:2990896/1‑93 (MQ=255)

                                                                                             cTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGat  <  1:2125683/94‑1 (MQ=255)

GGCGGCGATTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCCTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGAT  >  NC_000913/3957864‑3958050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`