| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1592120 = | 239 (0.800) | 3 (0.010) | 3/176 | 44.0 | 1.2% | pseudogene (3892/5323 nt) | yneO | pseudogene, AidA homolog |
| ? | NC_000913 | = 1755979 | 288 (1.100) | coding (771/1005 nt) | ynhG | murein L,D‑transpeptidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAACACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1592231‑1592120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accactatcggcAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGATAAA < NC_000913/1755979‑1755880 CAACACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAA > 1:1722891/1‑101CAACACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAA < 2:5342134/101‑1 AACACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAAC < 2:5346616/101‑1 ACACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACC < 1:107891/101‑1 ACACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACC > 2:6541015/1‑101 CACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCA > 2:2827114/1‑101 CACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCA > 2:6284939/1‑101 ACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGGACTGCGTGTCGCTAAAACCAC > 2:1800459/1‑101 ACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCAC < 1:5621721/101‑1 CATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACT > 2:5443677/1‑101 CATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCAATGCAGGTGATATGAACGTTATGCCTGTGGGGGGCACTGCGTGTCGCTAAAACCACc > 2:3334508/1‑100 ATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTA > 2:4417305/1‑101 ATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTA > 1:6418641/1‑101 ATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTA > 1:2407493/1‑101 TTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTAT > 1:4590103/1‑101 TAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATC < 2:2865788/101‑1 TAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATC > 1:6040982/1‑101 TAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATC > 2:5881716/1‑101 AATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCCCTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCG < 1:4917038/101‑1 AATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCG < 2:4098894/101‑1 AATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGGGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCG > 2:543767/1‑101 AATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGAGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCG > 2:2070098/1‑101 ATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGG < 2:4161627/101‑1 ATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGG < 1:3566188/101‑1 ATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTAGCGG > 1:1577426/1‑101 TATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGGC < 1:5184450/101‑1 TATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGGC < 1:3641762/101‑1 TATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGGC < 2:2948556/101‑1 TATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGGC > 1:6814461/1‑101 GAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACC < 2:4071621/66‑1 GAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACC > 1:4071621/1‑66 AACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTT > 1:6012703/1‑101 GCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATT < 2:6012703/101‑1 AACCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAG > 2:1858967/1‑101 ACCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGT < 1:5266547/101‑1 ACCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGT > 1:5140076/1‑101 ACCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGT < 2:6050402/101‑1 ACCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGT < 2:107161/101‑1 CCACTATCGGCAGAAGAACAGCAGATCGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTT < 1:2559476/101‑1 CCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTT > 1:1833585/1‑101 CCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTT < 1:4309431/101‑1 CCACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTT > 1:4653171/1‑101 CACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTA < 2:317012/101‑1 CACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTA > 1:6488141/1‑101 CACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTA > 2:4982297/1‑101 CACTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTA > 1:2036044/1‑101 ctTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATTCACACTGCCAGCAGGGTTTACGTAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAG < 2:3603441/99‑1 CTATCGGCAGAAGAACAGCAGAACGTTTAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGT < 1:4143843/101‑1 CTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGCCAATAAGGCTGTAGATCAGAAGTTAGT < 1:1932487/101‑1 CTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGg < 2:1008339/101‑2 CTATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGT < 2:265908/101‑1 TATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTC < 2:902405/101‑1 TATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTC > 1:6473172/1‑101 TATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTC > 2:3624232/1‑101 TATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTC < 2:2170055/101‑1 TATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTC > 1:7032015/1‑101 TATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTC > 1:6195867/1‑101 TATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTC > 1:184843/1‑101 tTCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGNTCAGAAGTNNGTNG < 2:1146979/100‑1 ATCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCG < 1:30474/101‑1 TCGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGA < 1:389279/101‑1 CGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGAT > 2:1621961/1‑101 CGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGAT < 1:5441358/101‑1 CGGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGAT < 1:5331467/101‑1 GGCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGATA > 1:5142794/1‑101 GCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGATAA > 1:5910159/1‑101 GCAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGATAA > 1:5352633/1‑101 CAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGATAAA < 1:4039682/101‑1 CAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGATAAA < 1:1378433/101‑1 CAACACATTAATATCCATAACAGCGGTGTGATGTCGGGAAATGTCACCACTGCAGGTGATATGAACGTTATGCCTGGGGGGGGCACTGCGTGTCGCTAAAACCACTATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1592231‑1592120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accactatcggcAGAAGAACAGCAGAACGTTCAGACAATGCCATACACACTGCCAGCAGGCTTTACGCAATTTAAAGACAATAAGGCTGTAGATCAGAAGTTAGTCGATAAA < NC_000913/1755979‑1755880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |