| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2578811 = | 292 (0.980) | 3 (0.010) | 3/178 | 44.3 | 1.0% | coding (1154/2004 nt) | tktB | transketolase 2, thiamin‑binding |
| ? | NC_000913 | 4010337 = | 308 (1.170) | coding (503/954 nt) | metR | DNA‑binding transcriptional activator, homocysteine‑binding | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGCGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2578921‑2578811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtcaggtGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCTGTT > NC_000913/4010337‑4010436 GCGCGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAG < 1:5451397/101‑1GCGCGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAG < 1:559665/101‑1 CGCGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGA < 1:1197093/101‑1 GCGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGAT < 2:3698770/101‑1 GCGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGAT < 1:4191375/101‑1 GCGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGAT > 1:3742602/1‑101 CGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATG > 1:6031553/1‑101 CGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATG < 1:3957222/101‑1 CGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATG < 1:7026296/101‑1 CGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATG < 2:3673049/101‑1 GATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGCTCTTCCTTCAGCGAAACAGAACCTTTCCAGATGG > 2:849354/1‑101 GATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGG < 1:5973888/101‑1 GATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGG > 1:3690132/1‑101 GATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGG > 1:3197101/1‑101 GATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGG > 1:2632127/1‑101 GATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGG < 1:5106065/101‑1 ATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGT > 1:1971329/1‑101 ATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGT > 2:2506427/1‑101 ATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGT < 1:2654025/101‑1 ATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGT < 1:3533471/101‑1 TGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTC < 2:4409541/101‑1 TGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTC < 1:4377627/101‑1 TGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTC < 1:3025362/101‑1 TGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTC < 1:4290976/101‑1 TGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTC < 1:6091850/101‑1 GCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCA < 2:6196080/101‑1 CGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGG < 2:1599604/101‑1 CGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGG > 1:2037069/1‑101 CGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGG > 2:3629961/1‑101 CGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGG > 2:1560178/1‑101 CGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGG > 2:1445752/1‑101 GTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGGT < 1:4944064/101‑1 GTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGGT > 1:6801602/1‑101 GTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGGT < 2:5974111/101‑1 GTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGGT > 1:5974111/1‑101 GTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGGT > 2:1994930/1‑101 ttcGCGATAGCGGTCATGCCAAATTCGCGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGGTt < 2:5162232/98‑2 AACAGAACCTTTCCAGATGGTCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATC > 2:5503312/1‑59 AACAGAACCTTTCCAGATGGTCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATC < 1:5503312/59‑1 gttAGATGGTCAGGTGCTAACACCAGACGCACTTCNTAGTCGAACATAGGCGAATAATGCAGGCCATTGCGCGGCAGAATATCGGANGCCATTACNNGANC < 2:1109222/98‑1 GATGGTCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGC < 1:4799366/101‑1 TGGTCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTC > 2:6229516/1‑101 TGGTCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTC > 1:5172907/1‑101 TGGTCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTC < 1:76022/101‑1 GGTCAGGTGCTAACCCCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCT < 2:6512021/101‑1 GGTCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCT < 2:337770/101‑1 GTCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTGCCAGATCCAGCTCTC < 1:3088446/101‑1 GTCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTC < 2:6388458/101‑1 TCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCC < 1:5017926/101‑1 TCAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCGCTCC > 1:6363748/1‑101 CAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCC < 1:5635429/101‑1 CAGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCC > 1:3234680/1‑101 AGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCT < 2:2450569/101‑1 AGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCT > 2:2302046/1‑101 AGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCT < 2:4291002/101‑1 AGGTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCT > 1:3559761/1‑101 GTGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCTGT < 1:4448031/101‑1 TGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCTGTT < 2:3515308/101‑1 TGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCTGTT < 2:4069287/101‑1 TGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCTGTT < 2:1867222/101‑1 TGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCTGTT > 1:6560196/1‑101 GCGCGATGCCGTTGGCGATAGCGGTCATGCCAAATTCACGCACCCCGTAGTGAATGTAGTTGCCCGCTGGATCTTCCTTCAGCGAAACAGAACCTTTCCAGATGGTCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2578921‑2578811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtcaggtGCTAACACCAGACGCACTTCATAGTCGAACATCGGCGAATAATGCAGGCCACTGCGCGGCAGAATATCGGACGTCATTACCAGATCCAGCTCTCCCTGTT > NC_000913/4010337‑4010436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |