Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913580,5140GA50.3% 196.1 / 285.2 159R153Q (CGG→CAG) ‡nohDDLP12 prophage; DNA packaging protein
Reads supporting (aligned to +/- strand):  ref base G (43/36);  new base A (40/40);  total (83/76)
Fisher's exact test for biased strand distribution p-value = 6.35e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 162 total aligned reads displayed.

TCCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGC  >  NC_000913/580451‑580613
                                                               |                                                                                                   
ttcctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTTCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTg                                                                <  1:5571910/96‑1 (MQ=0)
ttcctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTg                                                                <  2:5167585/96‑1 (MQ=0)
 tcctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTgg                                                               >  2:6187341/5‑101 (MQ=0)
 tcctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTgg                                                               >  1:1336976/5‑101 (MQ=0)
 tcctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTgg                                                               <  1:1602109/97‑1 (MQ=0)
 tcctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTgg                                                               <  1:744973/97‑1 (MQ=0)
 tcctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTgg                                                               <  1:2814133/97‑1 (MQ=0)
  cctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGa                                                              >  1:5922689/4‑101 (MQ=0)
  cctcTGTCGGTTCAGCGGCGCTTCCCGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGa                                                              >  1:5618320/4‑101 (MQ=0)
                  ggggTTTTCCGGAACTAGAACACCGACATGTTGATTCCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCgggg                                              <  2:6658891/98‑1 (MQ=1)
                      cttcccGGAGCTGGAAAACCGACATATTGCTTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGc                                          >  2:2851550/5‑101 (MQ=0)
                      cttcccGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCCGCGCTGGATGAAATAATACCGGGGTTGc                                          >  1:3971805/5‑101 (MQ=1)
                       ttcccGGAGCTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCt                                         <  2:5190469/98‑1 (MQ=1)
                             gagcTGGAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGa                                   >  1:6859580/4‑101 (MQ=0)
                                   gAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAatatat                             >  2:2518279/1‑101 (MQ=11)
                                   gAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAatatat                             <  2:4949138/101‑1 (MQ=11)
                                   gAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAatatat                             <  1:6094903/101‑1 (MQ=11)
                                   gAAAACCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAatatat                             >  1:818442/1‑101 (MQ=11)
                                    aaaaCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATc                            >  1:2554040/1‑101 (MQ=31)
                                    aaaaCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATc                            <  1:6978278/101‑1 (MQ=31)
                                    aaaaCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATc                            <  2:1988320/101‑1 (MQ=31)
                                    aaaaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATc                            <  2:2766750/101‑1 (MQ=11)
                                    aaaaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATc                            <  1:1636009/101‑1 (MQ=11)
                                    aaaaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATc                            <  1:1709959/101‑1 (MQ=11)
                                     aaaCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCg                           <  1:170698/101‑1 (MQ=32)
                                     aaaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCg                           >  2:4697227/1‑101 (MQ=11)
                                     aaaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCg                           >  2:5350728/1‑101 (MQ=11)
                                      aaCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATTCCGGGGTTGCTGAGTGAATATATCGa                          <  2:407251/101‑1 (MQ=18)
                                      aaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGa                          >  2:788575/1‑101 (MQ=11)
                                      aaCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGa                          >  1:3015545/1‑101 (MQ=11)
                                       aCCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGaa                         <  2:2937587/101‑1 (MQ=35)
                                       aCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGaa                         <  1:4939168/101‑1 (MQ=11)
                                       aCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGaa                         >  1:1983047/1‑101 (MQ=11)
                                       aCCGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGaa                         <  2:2687292/101‑1 (MQ=11)
                                        ccGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAAc                        <  1:3647536/101‑1 (MQ=11)
                                         cGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACa                       >  1:604824/1‑101 (MQ=38)
                                         cGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACa                       <  1:1536604/101‑1 (MQ=38)
                                         cGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACa                       >  1:1385385/1‑101 (MQ=38)
                                         cGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACa                       <  1:5094170/101‑1 (MQ=11)
                                         cGACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACa                       >  1:3842567/1‑101 (MQ=11)
                                         cGACATATTGATTTACTCAAGAAGGACATCATTAAAGCCGAGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGAGTTGCTGAGTGAATATATCGAAct                       >  2:3314966/1‑100 (MQ=2)
                                          gACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAg                      >  1:2524806/1‑101 (MQ=38)
                                          gACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAg                      >  2:6760064/1‑101 (MQ=38)
                                          gACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAg                      >  1:1842632/1‑101 (MQ=38)
                                          gACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAg                      >  2:5383117/1‑101 (MQ=38)
                                          gACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAg                      <  2:2562705/101‑1 (MQ=38)
                                          gACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAg                      <  2:26144/101‑1 (MQ=14)
                                          gACATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCGGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAg                      <  1:2495019/101‑1 (MQ=14)
                                           aCATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGt                     >  1:2374357/1‑101 (MQ=14)
                                           aCATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGt                     >  2:5130946/1‑101 (MQ=14)
                                           aCATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGt                     <  2:1768839/101‑1 (MQ=14)
                                           aCATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGt                     >  2:5505751/1‑101 (MQ=9)
                                            cATATTGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTc                    <  2:598525/101‑1 (MQ=14)
                                              tattGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAg                  <  1:1100005/99‑1 (MQ=14)
                                              tGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAg                  <  1:4194863/101‑1 (MQ=255)
                                               gTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                 <  2:6419177/101‑1 (MQ=255)
                                               gTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                 <  2:6471093/101‑1 (MQ=255)
                                               gTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                 >  2:2354059/1‑101 (MQ=255)
                                               attGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAgg                 <  1:3911692/100‑1 (MQ=14)
                                                ttGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGt                <  2:4284802/101‑1 (MQ=255)
                                                ttGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGt                <  2:2631700/101‑1 (MQ=255)
                                                ttGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGt                <  1:1142733/101‑1 (MQ=255)
                                                ttGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGt                <  1:2582601/101‑1 (MQ=14)
                                                ttGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGt                >  2:3614821/1‑101 (MQ=14)
                                                 tGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGtt               >  2:2308063/1‑101 (MQ=255)
                                                 tGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGtt               <  1:5850247/101‑1 (MQ=255)
                                                 tGATTTCCTCAAGAAGGACATCATTAAAGCCATGACCAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTTAATATANCGAACAGTNNGGnt               <  2:1136581/101‑1 (MQ=14)
                                                 tGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATATCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGtt               >  1:2637179/1‑101 (MQ=14)
                                                 tGATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGAGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGtt               >  2:1621258/1‑101 (MQ=14)
                                                  gATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTa              >  2:4825945/1‑101 (MQ=255)
                                                  gATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTa              >  2:937329/1‑101 (MQ=17)
                                                  gATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTa              <  1:967391/101‑1 (MQ=17)
                                                  gATTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTa              >  1:6666421/1‑101 (MQ=17)
                                                   aTTTCCTGAAACGGGATATCATCAAAGCCATGACCAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTaa             >  2:1041258/1‑101 (MQ=255)
                                                   aTTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTaa             >  2:887219/1‑101 (MQ=255)
                                                   aTTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTaa             >  1:5930770/1‑101 (MQ=255)
                                                   aTTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTaa             >  2:1596893/1‑101 (MQ=255)
                                                   aTTTCCTCAAGAAGGACATCATTAAAGCCATGAACAAAGCAGCTGCGCTGGATGAAATAATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTaa             >  1:6221983/1‑101 (MQ=17)
                                                    tttCCTGAAACGGGATATCATCAAAGCCATGAGCAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAc            >  2:2167906/1‑101 (MQ=255)
                                                    tttCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAc            >  2:2288064/1‑101 (MQ=255)
                                                    tttCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAc            >  2:6240805/1‑101 (MQ=255)
                                                    tttCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAAc            <  1:3811359/101‑1 (MQ=255)
                                                     ttCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACa           >  2:2828382/1‑101 (MQ=255)
                                                     ttCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACa           <  2:2983/101‑1 (MQ=255)
                                                     ttCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACa           >  1:5405178/1‑101 (MQ=255)
                                                       ccTGAAACGGGATATCGTCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACAGATCCCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAgg         <  1:3341468/101‑1 (MQ=255)
                                                       ccTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAgg         <  1:5071082/101‑1 (MQ=255)
                                                       ccTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAgg         <  1:4953126/101‑1 (MQ=255)
                                                        cTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGc        <  2:5452777/101‑1 (MQ=255)
                                                        cTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGc        >  1:4337777/1‑101 (MQ=255)
                                                         tGAAACGGGATATCATCAAAGCCATGAGCAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGCGTGAATATATCTAACAGTCAGGTTAACAgggt       <  2:6960285/101‑3 (MQ=17)
                                                         tGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCt       >  1:3575998/1‑101 (MQ=255)
                                                         tGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCt       >  1:3359042/1‑101 (MQ=255)
                                                         tGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCt       <  1:3192984/101‑1 (MQ=255)
                                                         tGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCt       <  2:3453357/101‑1 (MQ=255)
                                                          gAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTg      >  1:373154/1‑101 (MQ=255)
                                                          gAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTg      >  1:2090127/1‑101 (MQ=255)
                                                           aaaCGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGc     >  2:6052403/1‑101 (MQ=255)
                                                            aaCGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCg    >  1:4574714/1‑101 (MQ=255)
                                                              cGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGc  >  1:4266748/1‑101 (MQ=255)
                                                               |                                                                                                   
TCCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCATCAAAGCCATGAACAAAGCAGCCGCGCTGGATGAACTGATACCGGGGTTGCTGAGTGAATATATCGAACAGTCAGGTTAACAGGCTGCGGC  >  NC_000913/580451‑580613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑