New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4528083 =	127 (1.110)	3 (0.030)	3/452	NT	2.5%	intergenic (+17/+28)	ryjB/sgcQ	small RNA RyjB/KpLE2 phage‑like element; putative nucleoside triphosphatase
	?	NC_000913	4528108 =	113 (1.040)					intergenic (+42/+3)	ryjB/sgcQ	small RNA RyjB/KpLE2 phage‑like element; putative nucleoside triphosphatase
Rejected: Frequency below/above cutoff threshold.

CGCTCTGTGTTTCTGGCCTGACCGCCGGG‑ACGCGTACCGACAGCGCGCTGTTAAAACGGGTCAAAGAAACGGTGCCTGACACCGTCGTGTTGGCCAACACGGGCGTCTGCCTGGAAAACGTGGAGGAACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4528364‑4528083 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttatccccATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGTTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAGAGCGCATCAGGATGGTTGTTAAATACT  >  NC_000913/4528108‑4528387                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     cggTCTGTGTTTATGGCCTGACCGCCGGGCACG‑GTAACCACAGAGCGCTTTTAAAACGGGTCCAAGAAGCGGTGCCTGACACCGTCGTGTTGGCCAACACTGGCGTCTGCCTGGAAAACGTGGAGGAACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCGCATTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCC                                                                                                                                                                                                                                                                                           <  2:1102281/278‑1   CTCTGTGTTTCTGGCCTGACCGCCGGG‑ACGCGTACCGACAGCGCGCTGTTAAAACGGGTCAAAGAAACGGTGCCTGACACCGTCGTGTTGGCCAACACGGGCGTCTGCCTGGAAAACGTGGAGGAACAACTCAGTATCGCCGATGGCTGTGTGACCGCCACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACAAGGCGCGAGCCAGTCAGTTTATGGAAAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGATTATCCgcg                                                                                                                                                                                                                                                                                         >  1:1108126/1‑278        TGTTTCTGGCCTGACCGCCGGG‑ACGCGTACCGACAGCGCGCTGTTAAAACGGGTCAAAGAAACGGTGCCTGACACCGTCGTGTTGGCTAACACGGGCGTCTGCCTGGAAAACGTGGAGGAACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACAACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTCGACCAGGCGGGAGTCAGTCAGTTTATGGAGAAAGTGCATCAAATACGCCGATAAGATGAGGATAAGCAGAGGCCTTATCCacgggcaa                                                                                                                                                                                                                                                                                    >  1:1172008/1‑273                GCCTGACCGCCGGG‑ACGCGTACCGACAGCGCGCTGTTAAAACGGGTCAAAGAAACGGTGCCTGACACCGTCGTGTTGGCCAACACGGGCGTCTGCCTGGAAAACGTGGAGGAACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGCCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGTGCTTATCCCCtggcccttatacaa                                                                                                                                                                                                                                                                            >  1:591918/1‑267                                             CGCGCTGTTAAAACGGGTCAAATGAACGGTGGCTGACCCCGTCGTGTTGGCGCACACGGGCGTCTGCCTGGCAAACGTGGAGGAACAACTCGGGATCGGCGATGGCTGTGTGACCGCCACCACCTTTAAAAAGGACGTCGTTTTTGCGAATTTCGTTGACCCGGCGCGGATCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGGTGGGGATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGAC                                                                                                                                                                                                                                                 <  2:529245/280‑1                                                                                                                                                                               AAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAA                                                                                                                                                                                                                                                       >  1:390622/1‑144                                                                                                                                                                               AAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAA                                                                                                                                                                                                                                                       <  2:390622/144‑1                                                                                                                                                                                                                                                                           tctcttctCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTTGTAAACGAAAATGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGTTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAGAGCGCATCAG                   <  2:461517/272‑1                                                                                                                                                                                                                                                                                   CTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCC                                                                                                                                         >  1:919359/1‑154                                                                                                                                                                                                                                                                                   CTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCC                                                                                                                                         <  2:919359/154‑1                                                                                                                                                                                                                                                                                      ATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGTTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAGAGCGCATCAGGATGGTTGTTAA       >  1:1158773/1‑281                                                                                                                                                                                                                                                                                           CATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGTTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAGAGCGCATCAGGATGGTTGTTAAATACT  >  1:190374/1‑281                                                                                                                                                                                                                                                                                           CATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACG                                                                                                                                               >  1:165029/1‑140                                                                                                                                                                                                                                                                                           CATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACG                                                                                                                                               <  2:165029/140‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGCTCTGTGTTTCTGGCCTGACCGCCGGG‑ACGCGTACCGACAGCGCGCTGTTAAAACGGGTCAAAGAAACGGTGCCTGACACCGTCGTGTTGGCCAACACGGGCGTCTGCCTGGAAAACGTGGAGGAACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4528364‑4528083 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttatccccATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGGCAGACGCCCGTGTTGGCCAACACGACGGTGTCAGGCACCGTTTCTTTGACCCGTTTTAACAGCGCGCTGTCGGTACGCGTCCCGGCGGTCAGGCCAGAAACACAGAGCGCATCAGGATGGTTGTTAAATACT  >  NC_000913/4528108‑4528387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.