breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,875,521 | 0 | T | C | 21.1% | 111.6 / 17.8 | 57 | A28A (GCT→GCC) | yidX | putative lipoprotein YidX |
Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1207805 | 84 (0.720) | 22 (0.200) | 20/460 | 4.7 | 21.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
? | NC_000913 | = 1209602 | 86 (0.790) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
* | ? | NC_000913 | 1207790 = | 93 (0.790) | 18 (0.160) | 18/460 | 5.2 | 17.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
? | NC_000913 | 1209619 = | 88 (0.800) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
* | ? | NC_000913 | 4545906 = | 133 (1.140) | 4 (0.030) | 4/482 | 10.9 | 2.8% | coding (811/2637 nt) | fimD | type I fimbriae usher protein |
? | NC_000913 | 4546101 = | 145 (1.260) | coding (1006/2637 nt) | fimD | type I fimbriae usher protein | |||||
* | ? | NC_000913 | 4311487 = | 142 (1.210) | 4 (0.030) | 4/486 | 11.0 | 2.7% | coding (556/936 nt) | alsB | D‑allose ABC transporter periplasmic binding protein |
? | NC_000913 | 4312701 = | 144 (1.240) | coding (291/891 nt) | alsR | DNA‑binding transcriptional repressor AlsR | |||||
* | ? | NC_000913 | 3470143 = | 103 (0.880) | 3 (0.030) +28 bp |
3/436 | 11.0 | 2.9% | intergenic (‑290/+2) | chiA/tufA | endochitinase/translation elongation factor Tu 1 |
? | NC_000913 | = 4177184 | 120 (1.020) | intergenic (+56/‑174) | tufB/secE | translation elongation factor Tu 2/Sec translocon subunit SecE | |||||
* | ? | NC_000913 | = 1553986 | 84 (0.760) | 6 (0.050) +GCGGTAGTC |
3/444 | 11.1 | 6.3% | coding (1684/1698 nt) | maeA | malate dehydrogenase, NAD‑requiring |
? | NC_000913 | 1553987 = | 97 (0.830) | coding (1683/1698 nt) | maeA | malate dehydrogenase, NAD‑requiring | |||||
* | ? | NC_000913 | 950301 = | 105 (0.900) | 3 (0.030) | 3/468 | 11.4 | 2.9% | intergenic (+43/+39) | ycaK/pflA | putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme |
? | NC_000913 | 950331 = | 102 (0.920) | intergenic (+73/+9) | ycaK/pflA | putative NAD(P)H‑dependent oxidoreductase YcaK/pyruvate formate‑lyase activating enzyme | |||||
* | ? | NC_000913 | 3758791 = | 126 (1.080) | 3 (0.030) | 3/474 | 11.5 | 2.6% | coding (1071/1845 nt) | selB | selenocysteyl‑tRNA‑specific translation elongation factor |
? | NC_000913 | 3758996 = | 105 (0.930) | coding (866/1845 nt) | selB | selenocysteyl‑tRNA‑specific translation elongation factor | |||||
* | ? | NC_000913 | = 3197519 | 117 (1.020) | 5 (0.040) +GGA |
3/474 | 11.5 | 4.1% | coding (2123/2841 nt) | glnE | fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase |
? | NC_000913 | 3197520 = | 119 (1.020) | coding (2122/2841 nt) | glnE | fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase | |||||
* | ? | NC_000913 | 1953917 = | 107 (0.910) | 3 (0.030) | 3/476 | 11.5 | 2.4% | coding (476/972 nt) | cmoB | tRNA U34 carboxymethyltransferase |
? | NC_000913 | 1954226 = | 145 (1.280) | coding (785/972 nt) | cmoB | tRNA U34 carboxymethyltransferase |